Probes/primers found for taxon: Proteobacteria
| Hit type | Short name | Name (Alm et al.) | Specificity |
|---|---|---|---|
| Exact | GAM42a_A1041_A1040 | Representatives of the Xanthomonas group and the Alphaproteobacteria, Brevundimonas diminuta | |
| Spec | ALF1B | S-Sc-aProt-0019-a-A-17 | Alphaproteobacteria, some Deltaproteobacteria, Spirochaetes |
| Spec | ALF4-1322 | alpha4-subgroup of Proteobacteria | |
| Spec | ALF682 | S-Sc-aProt-0682-a-A-18 | Alphaproteobacteria from sludge anaerobic digesters |
| Spec | ALF73a | some Alphaproteobacteria | |
| Spec | ALF968 | Alphaproteobacteria, except of Rickettsiales | |
| Spec | Alvi2 | Unidentified Epsilonproteobacteria affiliated to Alvinella | |
| Spec | Alvi3 | Unidentified Epsilonproteobacteria affiliated to Alvinella | |
| Spec | Alvi4 | Unidentified Epsilonproteobacteria affiliated to Alvinella | |
| Spec | Alvi5 | Unidentified Epsilonproteobacteria affiliated to Alvinella | |
| Spec | Arco2 | Unidentified Epsilonproteobacteria affiliated to Arcobacter | |
| Spec | b-AO233 | Betaproteobacterial ammonia-oxidizing bacteria | |
| Spec | b1273 | mealybug betaproteobacterial endosymbionts | |
| Spec | b162 | mealybug betaproteobacterial endosymbionts | |
| Spec | b886 | mealybug betaproteobacterial endosymbionts | |
| Spec | b91 | mealybug betaproteobacterial endosymbionts | |
| Spec | BET42a | L-C-bProt-1027-a-A-17 | Betaproteobacteria |
| Spec | BET940 | Betaproteobacteria (excepted Comamonadaceae, Nitrosomonadaceae and Methylophilaceae) | |
| Spec | Beta1 | Betaproteobacteria | |
| Spec | Beta2 | Betaproteobacteria | |
| Spec | Beta3 | Betaproteobacteria | |
| Spec | Beta4 | Betaproteobacteria | |
| Spec | Betthio1001 | L-G-bThiob-1001-a-A-21 | Betaproteobacterial Thiobacilli |
| Spec | BONE23A | beta1-group of Betaproteobacteria | |
| Spec | BSC0459 | acid mine drainage beta-proteobacterial clones | |
| Spec | DELTA495a | S-C-dProt-0495-a-A-18 | Most Deltaproteobacteria and most Gemmatimonadetes |
| Spec | DELTA495b | S-*-dProt-0495-b-A-18 | some Deltaproteobacteria |
| Spec | DELTA495c | S-*-dProt-0495-c-A-18 | some Deltaproteobacteria |
| Spec | DSBO224 | Desulfobotulus sapovorans, Desulfovibrio fairfieldensis, and other Deltaproteobacteria | |
| Spec | E1e3 1150 | S-*-Ualp-1150-a-A-18 | some unclassified Alphaproteobacteria |
| Spec | Ep1 | Uncultured Epsilonproteobacteria affiliated to Nautiliaceae | |
| Spec | Epsi1 | Uncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira | |
| Spec | Epsi3 | Uncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira | |
| Spec | EPSY1384 | S-C-eProt-1384-a-A-18 | Epsilonproteobacteria |
| Spec | EPSY549 | S-C-eProt-0549-a-A-18 | Epsilonproteobacteria |
| Spec | EPSY914 | S-C-eProt-0914-a-A-18 | Epsilonproteobacteria |
| Spec | EUB338_V | S-D-Bact-0338-a-A-18 | Candidatus Cyrtobacter comes some Chloroflexi some Firmicutes some Proteobacteria |
| Spec | gam1-1246 | “Candidatus Gilliamella apicola” or Gamma-1 (symbiotic Gammaproteobacteria phylotype in honey bee) | |
| Spec | Gam1019 | S-S-g-Prot-1019-a-A-18 | phosphate accumulating bacteria (Gammaproteobacteria) |
| Spec | Gam1278 | S-S-g-Prot-1278-a-A-20 | phosphate accumulating bacteria (Gammaproteobacteria) |
| Spec | GAM42a | L-C-gProt-1027-a-A-17 | Gammaproteobacteria |
| Spec | GB | novel gammaproteobacterial group | |
| Spec | GB_1 and 2 | novel gammaproteobacterial group | |
| Spec | GB_2 | novel gammaproteobacterial group | |
| Spec | GB_3 | novel gammaproteobacterial group | |
| Spec | GB_4 | novel gammaproteobacterial group | |
| Spec | GB_5 | novel gammaproteobacterial group | |
| Spec | GB_6 (Gam1019) | novel gammaproteobacterial group | |
| Spec | GB_7 | novel gammaproteobacterial group | |
| Spec | GB_G1 (GAOQ989) | novel gammaproteobacterial group | |
| Spec | GB_G2 | novel gammaproteobacterial group | |
| Spec | I. leu. (IleuSYM581) | Gammaproteobacterial symbiont of Inanidrilus leukodermatus | |
| Spec | LKC1006 | S-*-eProt-1006-a-A-18 | Epsilonproteobacterial group II from Lower Kane Cave |
| Spec | LKC59 | S-*-eProt-0059-a-A-18 | Epsilonproteobacterial group I from Lower Kane Cave |
| Spec | NITROSO4E | Betaproteobacterial ammonia-oxidizing bacteria | |
| Spec | NOR1-56 | NOR1 lineage (Gammaproteobacteria) | |
| Spec | NOR2-1453 | NOR2 cluster group A (Gammaproteobacteria) | |
| Spec | NOR5-130 | NOR5 isolate KT71 (Gammaproteobacteria) | |
| Spec | NOR5-730 | NOR5 cluster (Gammaproteobacteria) | |
| Spec | Nost993 | S-*-Nost-993-a-A-18 | Filamentous Alphaproteobacteria |
| Spec | Nsc825 | S-*-Nsc-0825-a-A-18 | betaproteobacterial AOB |
| Spec | Nscoc128 | S-*-Nscoc-128-a-A-18 | Nitrosococcus oceani, N. halophilus (Gammaproteobacteria) |
| Spec | Nso1225 | S-F-bAOB-1224-a-A-20 | Betaproteobacterial ammonia-oxidizing bacteria |
| Spec | Nso190 | S-F-bAOB-0189-a-A-19 | Betaproteobacterial ammonia-oxidizing bacteria |
| Spec | O. tan. (OtanSYM581) | Gammaproteobacterial symbiont of Olavius tantalus | |
| Spec | OalgDEL136 | Deltaproteobacterial symbiont of Olavius algarvensis | |
| Spec | OalgGAM445 | Gammaproteobacterial, sulfur-oxidizing symbiont of Olavius algarvensis | |
| Spec | OcraDEL1 | Deltaproteobacterial symbiont 1 of Olavius crassitunicatus | |
| Spec | OcraDEL2 | Deltaproteobacterial symbiont 2 of Olavius crassitunicatus | |
| Spec | OcraDEL3 | Deltaproteobacterial symbiont 3 of Olavius crassitunicatus | |
| Spec | PPx1002 | S-*-PPx-1002-a-A-18 | Filamentous Alphaproteobacteria |
| Spec | PTB-all/646 | Alphaproteobacterial clade (all PTB) | |
| Spec | R-BT065 | subgroup of Betaproteobacteria | |
| Spec | SBR9-1a | S-D-s91a-0578-b-A-20 | Alphaproteobacterial SBR9 clone 1 (AY254694) |
| Spec | SBR9-1b | S-D-s91a-0778-b-A-18 | Alphaproteobacterial SBR9 clone 1 (AY254694) |
| Spec | SUL90 | S-*-Sul-0090-a-A-18 | Subgroup of Epsilonproteobacteria (Uncultured Helicobacteraceae, Clone GD17b, Clone GD17a) |
| Spec | T25-1028 | clone T25 and T19 of a subgroup within the Betaproteobacteria | |
| Spec | T25-220 | clone T25 and other clones of a subgroup within the Betaproteobacteria, not clone T19 | |
| Spec | T28-1435 | clone T28 and T29 of a subgroup within the Alphaproteobacteria | |
| Spec | T28-649 | clone T28 and T29 of a subgroup within the Alphaproteobacteria, Sphingomonas capsulata | |
| Spec | Thio-1032 | S-*-Thio-1032-a-A-18 | some Thiobacillus and some unclassified Betaproteobacteria |
| Spec | Ualp-1109 | S-*-Ualp-1109-a-A-18 | some unclassified Alphaproteobacteria |
| Spec | Ubet-0834 | S-*-Ubet-0834-a-A-18 | some unclassified Betaproteobacteria |
| Spec | uBet-0984 | S-*-uBet-0984-a-A-18 | some unclassified Betaproteobacteria |
| Spec | Ubet-0990 | S-*-Ubet-0990-a-A-21 | some unclassified Betaproteobacteria |
| Spec | UNIV1389a | S-D-Univ-1389-a-A-18 | Bacteria, not Epsilonproteobacteria |
| Spec | WJ20646 | acidophilic gamma-Proteobacteria WJ2 and PK51 and some acid mine drainage clones | |
| Spec | XenoGam441 | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives | |
| Spec | XenoGam666 | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives | |
| Spec | XenoGam727 | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives |
