Probes/primers found for taxon: Bacillus
| Hit type | Short name | Name (Alm et al.) | Specificity |
|---|---|---|---|
| Exact | 18 | Bacillus anthracis, B. cereus | |
| Exact | 19 | Bacillus anthracis, B. cereus | |
| Exact | 20 | Bacillus anthracis, B. cereus | |
| Exact | Baccla5 | Bacillus clausii and B. gibsonii | |
| Exact | Bacil1 | Bacillus | |
| Exact | Bacil16 | Bacillus | |
| Exact | Bacpsc 3 | Bacillus pseudoalcaliphilus and Bacillus alcalophilus | |
| Exact | Bacsprt1 | Bacillus sporothermodurans and Bacillus oleronius | |
| Exact | Bacsprt2 | Bacillus sporothermodurans and Bacillus oleronius | |
| Exact | Bmy843 | S-*-Bmy-0843-a-A-18 | Bacillus |
| Exact | LGC353b | Bacillus | |
| Exact | REX72 | Bacillus | |
| Exact | Tbcil832 | S-*-Tbcil-0832-a-A-18 | thermophilic Bacillus spp. |
| Spec | 10 | Bacillus medusa, B. thuringiensis | |
| Spec | 11 | Bacillus medusa, B. thuringiensis | |
| Spec | 12 | Bacillus medusa, B. thuringiensis | |
| Spec | 13 | Bacillus medusa, B. thuringiensis | |
| Spec | 14 | Bacillus mycoides | |
| Spec | 15 | Bacillus mycoides | |
| Spec | 16 | Bacillus mycoides | |
| Spec | 17 | Bacillus mycoides | |
| Spec | 21 | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis | |
| Spec | 22 | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis | |
| Spec | 23 | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis | |
| Spec | 24 | Bacillus subtilis | |
| Spec | 25 | Bacillus subtilis | |
| Spec | 26 | Bacillus subtilis | |
| Spec | 27 | Bacillus subtilis | |
| Spec | 28 | Subtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis | |
| Spec | 29 | Subtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis | |
| Spec | 30 | Subtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis | |
| Spec | ACAC | Actinobacillus actinomycetemcomitans | |
| Spec | ACT465a | Acidithiobacillus | |
| Spec | ATT0223 | Acidithiobacillus thiooxidans | |
| Spec | Bac10 | Some Bacillus cereus and B. thuringiensis | |
| Spec | Bac25 | Bacillus subtilis et rel. cluster | |
| Spec | Bacaga2 | Bacillus agaradherens | |
| Spec | Bacaga3 | Bacillus agaradherens | |
| Spec | Bacazo3 | Bacillus azotoformans | |
| Spec | Bacbad2 | Bacillus badius | |
| Spec | Bacbae2 | Bacillus baekryungensis | |
| Spec | Bacbae3 | Bacillus baekryungensis | |
| Spec | Bacben1 | Bacillus bengalicus | |
| Spec | Baccer2 | Bacillus cereus et rel. cluster | |
| Spec | Baccer7 | Bacillus cereus et rel. cluster | |
| Spec | Baccer8 | Some Bacillus cereus and B. thuringiensis | |
| Spec | Baccir1 | Bacillus circulans | |
| Spec | Baccir3 | Bacillus circulans | |
| Spec | Baccoa1 | Bacillus coagulans | |
| Spec | Baccoh2 | Bacillus cohnii | |
| Spec | Baccoh3 | Bacillus cohnii | |
| Spec | Baccoh4 | Bacillus cohnii | |
| Spec | Bacfara1 | Bacillus farraginis and Kurthia zopfii | |
| Spec | Bacfara2 | Bacillus fortis et rel. cluster | |
| Spec | Bacfir5 | Bacillus firmus | |
| Spec | Bacfle1 | Bacillus flexus | |
| Spec | Bacfor1 | Bacillus fortis et rel. cluster | |
| Spec | Bacfun 3 | Sporolactobacillus dextrus | |
| Spec | Bacfun 6 | Sporolactobacillus dextrus | |
| Spec | Bachor1 | Bacillus horikoshii | |
| Spec | Bachrt1 | Bacillus horti | |
| Spec | Bacil60 | Bacillus sphaericus | |
| Spec | Bacjeo2 | Bacillus jeotgali | |
| Spec | Bacjeo5 | Bacillus jeotgali | |
| Spec | Bacjeo6 | Bacillus jeotgali | |
| Spec | Backru5 | Bacillus krulwichiae | |
| Spec | Bacmac4 | Bacillus macroides et rel. cluster | |
| Spec | Bacmar1 | Bacillus marsiflavi | |
| Spec | Bacmega1 | Bacillus megaterium | |
| Spec | Bacmet1 | Bacillus methanolicus | |
| Spec | Bacmet2 | Bacillus methanolicus | |
| Spec | Bacmis9 | Bacillus vedderi | |
| Spec | Bacmyc1 | Bacillus mycoides | |
| Spec | Bacmyc3 | Bacillus mycoides | |
| Spec | BaCoa1 | Bacillus coagulans cluster | |
| Spec | Bacoler1 | Bacillus oleronius | |
| Spec | Bacpich2 | Bacillus pichinotii | |
| Spec | Bacpich3 | Bacillus pichinotyi | |
| Spec | Bacpsf1 | Bacillus pseudofirmus | |
| Spec | Bacpsf3 | Bacillus pseudofirmus | |
| Spec | Bacpum2 | Bacillus pumillus | |
| Spec | Bacsmi1 | Bacillus smithii | |
| Spec | Bacsmi4 | Bacillus smithii | |
| Spec | Bacsmi5 | Bacillus smithii | |
| Spec | Bacsub12 | Some Bacillus subtilis spp. | |
| Spec | Bacsub2 | Bacillus subtilis et rel. cluster | |
| Spec | Bacsub7 | Some spp. from Bacillus subtilis et rel. cluster | |
| Spec | Bacsub9 | Some spp. from Bacillus subtilis et rel. cluster | |
| Spec | Bacved 3 | Bacillus vedderi | |
| Spec | Bacved 4 | Bacillus vedderi | |
| Spec | Bchikob2 | Bacillus chinolyticus and Paenibacillus kobensis | |
| Spec | Behi1 | Bacillus ehimensis (within Paenibacillus koreensis cluster) | |
| Spec | BLS1295 | Bacillus-Lactobacillus-Streptococcus subgroup | |
| Spec | Brbac18 | Brevibacillus borstelensis | |
| Spec | Brbac2 | Brevibacillus | |
| Spec | Brbac3 | Brevibacillus | |
| Spec | Brbac4 | Brevibacillus | |
| Spec | Brbac5 | Brevibacillus | |
| Spec | Brbac6 | Brevibacillus agri | |
| Spec | Brbac8 | Brevibacillus | |
| Spec | DEN67 | Methanol-utilizing denitrifying cluster group A closely related to the obligate methylotrophs Methylobacillus and Methylophilus in the order Methylophilales | |
| Spec | LAA-1 | Lactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004 | |
| Spec | LAA-2 | Lactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004 | |
| Spec | LAA-3 | Lactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004 | |
| Spec | Lab2185_87 | S-*-Lbre-0087-a-A-24 | Lactobacillus reuteri |
| Spec | Lab9057_570 | S-S-Lbad-0570-a-A-23 | Lactobacillus taiwanensis - L. johnsonii - L. gasseri group |
| Spec | Laci66 | Lactobacillus acidophilus | |
| Spec | Lacto1 | Lactobacillus fermentum | |
| Spec | Lacto10 | Lactobacillus brevis | |
| Spec | Lacto108 | Lactobacillus perolens | |
| Spec | Lacto15 | Lactobacillus | |
| Spec | Lacto26 | Lactobacillus plantarum | |
| Spec | Lacto39 | Lactobacillus | |
| Spec | Lacto41 | Lactobacillus acidophilus | |
| Spec | Lacto42 | Lactobacillus delbrueckii | |
| Spec | Lacto60 | Lactobacillus acidophilus | |
| Spec | Lacto61 | Lactobacillus plantarum | |
| Spec | Lacto722 | S-G-Lacb-0722-a-A-25 | Lactobacillus group |
| Spec | Lacto73 | Lactobacillus casei | |
| Spec | Lacto87 | Lactobacillus alimentarius | |
| Spec | Lacto90 | Lactobacillus salivarius | |
| Spec | Lacto99 | Lactobacillus perolens | |
| Spec | Lba | Lactobacillus acidophilus (cluster A1) | |
| Spec | Lbd | Lactobacillus delbrueckii subsp. | |
| Spec | Lbg | Lactobacillus gasseri (cluster B1) | |
| Spec | Lbj | Lactobacillus johnsonii (cluster B2) | |
| Spec | Lbre90 | Lactobacillus brevis | |
| Spec | Lbrev | Lactobacillus brevis | |
| Spec | Lcarh | Lactobacillus casei/rhamnosus | |
| Spec | Lcoll | Lactobacillus collinoides | |
| Spec | Lcory | Lactobacillus coryniformis | |
| Spec | Ldel | Lactobacillus delbrueckii | |
| Spec | Lfarc | Lactobacillus farciminis | |
| Spec | Lfer66 | Lactobacillus fermentum | |
| Spec | Lhilg | Lactobacillus hilgardii | |
| Spec | Lis-1255 | Genus Listeria, Bacillus thermosphacta, Bacillus campestris | |
| Spec | Lmali | Lactobacillus mali | |
| Spec | Lpar | Lactobacillus paracasei | |
| Spec | Lpara | Lactobacillus casei, Lactobacillus paracasei | |
| Spec | Lpcar | Lactobacillus casei/paracasei/rhamnosus | |
| Spec | Lpla67 | Lactobacillus plantarum | |
| Spec | LPLANG | Lactobacillus plantarum 423 | |
| Spec | Lreu92 | Lactobacillus reuteri | |
| Spec | Lrum67 | Lactobacillus ruminis | |
| Spec | Lsak | Lactobacillus sakei | |
| Spec | LSAL | Lactobacillus salvirius 241 | |
| Spec | Lzeae | Lactobacillus zeae, Lactobacillus casei | |
| Spec | MetMet1 | Methylobacillus glycogenes, Methylobacillus praetensis and Methylomonas methylovora | |
| Spec | Metvor2 | Methylovorus mays, Methylovorus glycosetrophus and Methylobacillus | |
| Spec | Metvor3 | Methylovorus mays, Methylovorus glycosetrophus and Methylobacillus | |
| Spec | Paeazo | Paenibacillus azotofixans | |
| Spec | Paen5 | Paenibacillus | |
| Spec | Paen6 | Paenibacillus | |
| Spec | Paeni1-2 | Paenibacillus naphthalenovorans | |
| Spec | Paeni4-2 | Paenibacillus popolliae et rel. cluster (including P. lentimorbus, P. thyaminolyticus) | |
| Spec | Paeni5-2 | Paenibacillus polymyxa | |
| Spec | Paeni7-1 | Paenibacillus borealis | |
| Spec | Paeni7-2 | Paenibacillus azotofixans | |
| Spec | Paeni7-3 | Paenibacillus azotofixans | |
| Spec | Palgi2 | Paenibacillus alginoliticus | |
| Spec | PalgiG1 | Paenibacillus alginoliticus et rel. cluster | |
| Spec | PalgiG3 | Paenibacillus alginoliticus et rel. cluster | |
| Spec | Palv | Paenibacillus alvei | |
| Spec | Palv2 | Paenibacillus apiarius | |
| Spec | Pamy3 | Some Paenibacillus spp. from Paenibacillus amylolyticus et rel. cluster | |
| Spec | Pazma1 | Paenibacillus azotofixans and P. maquariensis | |
| Spec | Pbo1 | Paenibacillus borealis | |
| Spec | Pbo1maq | Some Paenibacillus maquariensis spp. and uncultured Peanibacillus | |
| Spec | Pbo2 | Paenibacillus borealis | |
| Spec | Pchfabo1 | Paenibacillus chibensis, Paenibacillus flavisporus, Paenibacillus borealis | |
| Spec | Pchib2 | Paenibacillus chibensis cluster | |
| Spec | Pchinapi | Paenibacillus chinjuensis and Paenibacillus apiarius | |
| Spec | Pcukoho1 | Paenibacillus curdlanolyticus and Paenibacillus kobensis | |
| Spec | Pdae1 | Paenibacillus daejeonensis et rel. cluster (including P. polymyxa) | |
| Spec | Pdae2 | Paenibacillus daejeonensis et rel. cluster (including P. polymyxa) | |
| Spec | PeBr | Paenibacillus and Brevibacillus | |
| Spec | Phon1 | Cohnella (Paenibacillus honkongensis) | |
| Spec | Phon2 | Cohnella (Paenibacillus honkongensis) | |
| Spec | Pkol3 | Paenibacillus koleovorans | |
| Spec | Pkor1 | Paenibacillus koreensis | |
| Spec | Pkor2 | Paenibacillus koreensis | |
| Spec | Plac | Paenibacillus lactis | |
| Spec | Plar4 | Paenibacillus larvae | |
| Spec | Pnaf1 | Paenibacillus naphthalenovorans | |
| Spec | Pnem1 | Paenibacillus nematophilus | |
| Spec | Pnem2 | Paenibacillus nematophilus | |
| Spec | Pnem3 | Paenibacillus nematophilus | |
| Spec | Pnem4 | Paenibacillus nematophilus | |
| Spec | Pnem6 | Paenibacillus nematophilus | |
| Spec | Pnem7 | Paenibacillus nematophilus | |
| Spec | Ppop4 | Paenibacillus popolliae et rel. cluster (including P. lentimorbus, P. thyaminolyticus) | |
| Spec | Ppotu | Paenibacillus popilliae et rel. and Peanibacillus turicensis | |
| Spec | Pval2 | Paenibacillus validus | |
| Spec | Pvalnaf | Paenibacillus validus, Paenibacillus naphtalenovorans | |
| Spec | Pvalnafchin2 | Paenibacillus validus, Paenibacillus naphtalenovorans, Paenibacillus chinjuensis | |
| Spec | Pvel4 | Paenibacillus mucilaginosus | |
| Spec | Pvelch1 | Paenibacillus velasolus and Paenibacillus chinjuensis | |
| Spec | Pvelch2 | Paenibacillus velasolus and Paenibacillus chinjuensis | |
| Spec | Pxya | Paenibacillus xylanilyticus and P. illinoisensis | |
| Spec | S-S-H.neap-635-a-A-19 | Halothiobacillus neapolitanus | |
| Spec | S-S-T.plum-450-a-A-18 | Thiobacillus plumbophilus | |
| Spec | TBD121 | S-*-Tbdt-0121-a-A-18 | Thiobacillus denitrificans and Thiobacillus thioparus |
| Spec | TBD1419 | S-S-Tb.den-1419-a-A-18 | Thiobacillus denitrificans |
| Spec | TF539 | Acidithiobacillus ferroxidans | |
| Spec | Thio-1032 | S-*-Thio-1032-a-A-18 | some Thiobacillus and some unclassified Betaproteobacteria |
| Spec | Thio2 | Acidithiobacillus | |
| Spec | Thio3 | Thiobacillus denitrificans cluster | |
| Spec | Thio4 | Thiobacillus denitrificans cluster | |
| Spec | Thio820 | S-S-Thio-0820-a-A-22 | Thiobacillus thiooxidans, T. ferrooxidans |
