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Probes targeting symbiotic microbes

Probe name Specificity
CC23aCaedibacter caryophilus (C. caryophyla) and other Caedibacter-related endosymbionts of Acanthamoeba spp.
PcaeC9Candidatus Paracaedibacter acanthamoebae (endosymbiont of Acanthamoeba sp. UWC9)
PcaeE39Candidatus Paracaedibacter symbiosus (endosymbiont of Acanthamoeba sp. UWE39)
CaeAc998Candidatus Caedibacter acanthamoebae (endosymbiont of Acanthamoeba polyphaga HN-3)
Ctaenio-998Caedibacter taeniospiralis
b91mealybug betaproteobacterial endosymbionts
b162mealybug betaproteobacterial endosymbionts
b886mealybug betaproteobacterial endosymbionts
b1273mealybug betaproteobacterial endosymbionts
g80secondary endosymbiont of Planococcus citri
g458secondary endosymbiont of Planococcus citri
g630secondary endosymbiont of Planococcus citri
g1273secondary endosymbiont of Planococcus citri
Cap1428Candidatus capitivii acidiprotistae
OalgGAM445Gammaproteobacterial, sulfur-oxidizing symbiont of Olavius algarvensis
OalgDEL136Deltaproteobacterial symbiont of Olavius algarvensis
I. leu. (IleuSYM581)Gammaproteobacterial symbiont of Inanidrilus leukodermatus
O. tan. (OtanSYM581)Gammaproteobacterial symbiont of Olavius tantalus
TTI-732Treponema cluster I
Dev1-486ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp.
Dev14-486ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp.
Dev14-Tp652ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp.
Oxy8-Tp444ectosymbiotic spirochetes on Oxymonas sp. and Stephanonympha sp.
Oxy26-Tp1281ectosymbiotic spirochetes on Oxymonas sp. and Stephanonympha sp.
AcRic90Rickettsia-related endosymbionts of Acanthamoeba strains UWC8 and UWC36
AcRic1196Rickettsia-related endosymbionts of Acanthamoeba strains UWC8 and UWC36
1109TY1RMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1109TY2RMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1109TY3RMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1174TY1RMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1174TY2RMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1174TY3RMethanobrevibacter-related endosymbionts of Reticulitermes speratus
prV2uncultured alphaproteobacterium
prV6uncultured alphaproteobacterium
prV8uncultured alphaproteobacterium
Aph1180Candidatus Amoebophilus asiaticus
RhabdoCandidatus Rhabdochlamydia porcellionis
Rick_527members of the Rickettsiaceae family Caedibacter caryophilus
Rick_1442members of the Rickettsiaceae family
BuCcBuchnera aphidicola Cc
SCcS-Symbiont R-Type
UV7-763Parachlamydia sp. UV-7
TG1-Ta-RsaCandidatus Endomicrobium trichonymphae
TG1-Pv-RsaCandidatus Endomicrobium pyrsonymphae
Poly_862Polynucleobacter necessarius-cluster
Proca438Candidatus Procabacter sp.
Actino837specific for phylotype Rs-Q42/RsW01-017 in Propionibacteriaceae
ZNS1439Zoothamnium niveum ectosymbiont
ZNS196Zoothamnium niveum ectosymbiont
OcraDEL1Deltaproteobacterial symbiont 1 of Olavius crassitunicatus
OcraDEL2Deltaproteobacterial symbiont 2 of Olavius crassitunicatus
OcraDEL3Deltaproteobacterial symbiont 3 of Olavius crassitunicatus
CribseqCriblamydia sequanensis
TG1-Rsd17specific for phylotypes Rs-D17 amp RsTG1 in candidate phylum Termite Group 1
TG1-HsTG1-248specific for phylotype HsTG1 in candidate phylum Termite Group 1
TG1-T-287most members of subphylum 1 of candidate phylum Termite Group 1
TG1-HsTG3-193specific for phylotype HsTG3 in candidate phylum Termite Group 1
TG1-RsD95-123specific for phylotypes Rs-D95, RsDe11, RsDr18 in candidate phylum Termite Group 1
TG1-RsD43-64specific for phylotypes Rs-D43, RsPgL2-11, RsPgO2-18 in candidate phylum Termite Group
TG1-GfMT-287specific for phylotype GfMT5-8 in candidate phylum Termite Group 1
TG1End1023T1Endomicrobia phylotypes ZnTc-1, HsTc-1, RsTG1
TG1End1027Most Endomicrobia lineages
TG1-TriG1-HsjEndomicrobia HsTc-1
TG1-Joe-KfEndomicrobia phylotype KfJe-1
TG1-Dev-NcaEndomicrobia phylotype NcDv-1
Oilv/OcraGAM1Olavius ilvae / O. crassitunicatus Gamma 1 symbiont
Oalg/OilvGAM3Olavius algarvensis / O. ilvae Gamma 3 symbionts
OilvDEL1Olavius ilvae Delta 1 symbiont
Oalg/OilvDEL3Olavius algarvensis/ O. ilvae Delta 3 symbiont
OalgDEL4Olavius algarvensis Delta 4 symbiont
SPIROOlavius algarvensis / O. crassitunicatus /O. loisae spirochete symbionts
Bnix-64Candidatus Endonucleobacter bathymodioli
Bnix-643Candidatus Endonucleobacter bathymodioli
Bnix-1249Candidatus Endonucleobacter bathymodioli
PDD8_644Candidatus Cochliophilus cryoturris, symbiont of Cochliopodium minus
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    • Primer
    • Probes used for FISH