| Probe name |
Specificity |
| ACA652 (ACA23A) | Acinetobacter |
| ALBO34a | Bordetella spp., Alcaligenes spp. (sensu stricto) |
| Bcv13b | Burkholderia vietnamensis, B. cepacia |
| Chls-0523 | Chlamydiales |
| DDK3 | Treponema sp. DDKL-3 |
| DDK4 | Treponema phagedenis, DDKL-4 |
| Eampr18 | Enterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus |
| Eamprs09 | Enterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus, E. sulfureus |
| Eas09 | Enterococcus asini |
| Eav58i | Enterococcus avium |
| Eca18i | Enterococcus casseliflavus |
| Ecafl09i | Enterococcus casseliflavus, E. flavescens |
| ECC460 (ECC 461) | Enterococcus columbae, Enterococcus cecorum |
| Ecc461 | Enterococcus columbae, E. cecorum |
| Eacdfg57 | Enterococcus casseliflavus, E. flavescens, E. asini, E. dispar, E. gallinarum |
| Ece09 | Enterococcus cecorum |
| ECE83 (6B) | Enterococcus cecorum |
| ECE91 (ECE 92) | Enterococcus cecorum |
| Ece92 | Enterococcus cecorum |
| Ecf459 | Enterococcus casseliflavus, E. flavescens, E. dispar, E. pseudoavium |
| Ecg191 | Enterococcus casseliflavus, E. flavescens |
| ECG192 (ECG 191) | Enterococcus gallinarum, Enterococcus flavescens, Enterococcus casseliflavus |
| Eco09i | Enterococcus columbae |
| ECO1167 (ECO 45A) | Escherichia coli |
| Ecoce58 | Enterococcus cecorum, E. columbae |
| Edfm57 | Enterococcus durans, E. faecium, E. mundtii |
| EDI130 (EDI 131) | Enterococcus dispar |
| Edi131 | Enterococcus asini |
| Edi137 | Enterococcus dispar |
| Edi38 | Enterococcus dispar |
| Edu58 | Enterococcus durans |
| Eduhi09 | Enterococcus durans, E. hirae |
| Efa54 | Enterococcus faecalis |
| Efi58 | Enterococcus faecium |
| Efl58i | Enterococcus flavescens |
| Efs129 | Enterococcus faecalis |
| Ega09 | Enterococcus gallinarum |
| Ema58 | Enterococcus malodorans |
| Emu58 | Enterococcus mundtii |
| EMU87 | Enterococcus mundtii |
| ENC1249 | Enterococcus saccharolyticus, E.dispar, E.casseliflavus, E.faecium, E.flavescens, E.gallinarum, E.columbae, E.sulfureus |
| ENC1249-Comp | Enterococcus malodoratus, E.avium, E.pseudoavium, E.raffinosus, E.durans, E.mundtii, Lb.brevis, Cb.brevisimilis, Cb.divergens |
| Enc1259 | Enterococcus spp. |
| Enc131 | Enterococcus spp. |
| Enc145 | Enterococcus spp. |
| Enc38i | Enterococcus spp., Melisococcus spp., Tetragenococcus spp., Vagococcus spp. |
| ENC90 (ENC 91) | Enterococcus faecium, E.mundtii, E.hirae |
| Enc93 | Enterococcus hirae, E. faecium |
| Eps58 | Enterococcus pseudoavium |
| Era58 | Enterococcus raffinosus |
| Esa09 | Enterococcus saccharolyticus |
| Esa38 | Enterococcus asini, E. saccharolyticus |
| Esa452 | Enterococcus saccharolyticus |
| ESA88 (ESA 89) | Enterococcus saccharolyticus |
| Esasu58 | Enterococcus sulfureus, E. saccharolyticus |
| Eso18i | Enterococcus solitarius |
| Eso193 | Enterococcus solitarius |
| Eso58 | Enterococcus solitarius |
| Esoha57 | Enterococcus solitarius, Tetragenococcus halophilus |
| Esu18 | Enterococcus sulfureus |
| Esu90 | Enterococcus sulfureus |
| LEG226 | Legionellaceae |
| LEG705 | Legionella |
| LEGPNE1 | Legionella pneumophila |
| Myb736a | Mycobacterium complex |
| Myb736b | Mycobacterium complex |
| SSU1029 | Streptococcus suis |
| SUBU1237 | Burkholderia spp., Sutterella spp. |
| TDEN | Treponema denticola |
| TMAL | Treponema maltophilum |
| TPEC | Treponema pectinovorum |
| TRE I | oral Treponema spp. group I |
| TRE II | oral Treponema spp. group II |
| TRE III | oral Treponema spp. group III |
| TRE IV | oral Treponema spp. group IV |
| TRE V | oral Treponema spp. group V |
| TRE VI | oral Treponema spp. group VI |
| TRE VII | oral Treponema spp. group VII |
| TSOC | Treponema socranskii |
| TVIN | Treponema vincentii |
| Stemal | Stenotrophomonas maltophilia |
| Burcep | Burkholderia cepacia |
| Burkho | Burkholderia spp. |
| Haeinf | Haemophilus influenzae |
| Sau | Staphylococcus aureus |
| Spn | Streptococcus pneumoniae |
| Ent | Enterobacteriaceae except Proteus spp. |
| Kpn | Klebsiella pneumoniae |
| Caal | Candida albicans |
| Cagl | Candida (Torulopsis) glabrata |
| Ckrus | Candida krusei |
| Cpara651 (Cpara) | Candida parapsilosis |
| Str | Streptococcus spp. |
| Spy | Streptococcus pyogenes |
| Saga | Streptococcus agalactiae |
| Hpy-1 | Helicobacter pylori |
| ClaR1 | clarithromycin resistant Helicobacter pylori |
| ClaR2 | clarithromycin resistant Helicobacter pylori |
| ClaR3 | clarithromycin resistant Helicobacter pylori |
| ClaWT | Helicobacter pylori (clarithromycin sensitve) |
| Pce | Burkholderia spp. |
| PPC | Burkholderia spp., Sutterella wadsworthia |
| PseaerA | Pseudomonas aeruginosa |
| PseaerA | Pseudomonas aeruginosa |
| 18 | Bacillus anthracis, B. cereus |
| 19 | Bacillus anthracis, B. cereus |
| 20 | Bacillus anthracis, B. cereus |
| 21 | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis |
| 22 | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis |
| 23 | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis |
| Veil223 | Veillonella dispar, Veillonella parvula, Veillonella atypica |
| AVI | Enterococcus avium |
| ASI | Enterococcus asini |
| CEC | Enterococcus cecorum |
| COL | Enterococcus columbae |
| CGF | Enterococcus casseliflavus, E. gallinarum, E. flavescens |
| DUR | Enterococcus durans |
| DIS | Enterococcus dispar |
| FMDUR | Enterococcus faecium, E. durans |
| HIR | Enterococcus hirae |
| MAL | Enterococcus malodoratus |
| MUN | Enterococcus mundtii |
| PSE | Enterococcus pseudoavium |
| RAF | Enterococcus raffinosus |
| SAC | Enterococcus sacharolyticus |
| SOL | Enterococcus solitarius |
| SUL | Enterococcus sulfureus |
| Chlae-574 | Chlamydiaceae |
| Chla-0232 | Chlamydia |
| Chlph-0583 | Chlamydophila |
| Ct-0623 | Chlamydia trachomatis |
| Cpn-0214 | Chlamydophila pneumoniae |
| Cpn-0974 | Chlamydophila pneumoniae |
| Cps-1414 | “Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae |
| Cps-1353 | “Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae |
| Bn9-658 | subgroup of the Parachlamydiaceae including Parachlamydia acanthamoebae (Hallaposs coccus),
endosymbionts of Acanthamoebae sp. UWE25 and UWE1 |
| ParaC-0658 | subgroup of the Parachlamydiaceae including Neochlamydia hartmannellae, endosymbiont of Acanthamoeba sp. UWC22 |
| Enterbact D | some members of the Enterobacteriaceae |
| Enterbact B | some members of the Enterobacteriaceae and Vibrionaceae |
| Urobe63a | uncultured Ruminococcus obeum-like bacteria |
| Urobe63b | uncultured Ruminococcus obeum-like bacteria |
| ACAC | Actinobacillus actinomycetemcomitans |
| B(T)AFO | Tannerella forsythensis (Bacteroides forsythus) |
| POGI | Porphyromonas gingivalis |
| PRIN | Prevotella intermedia |
| FUSO | Fusobacterium spp. |
| VEPA | Veillonella parvula |
| Cp1 | Clostridium perfringens |
| Cp2 | Clostridium perfringens |
| Cp3 | Clostridium perfringens |
| ARBA (23-mer) | Arcobacter spp. |
| ARBA (27-mer) | Arcobacter spp. |
| ARBU (24-mer) | Arcobacter butzleri |
| Hp16S-1 | Helicobacter pylori |
| ALBO577 | Alcaligenes, Bordetella and close relatives |
| EBAC1790 | Enterobacteriaceae |
| Hpy16S | Helicobacter pylori |
| Bfra602 | Bacteroides fragilis group |
| Bdis656 | Bacteroides distasonis |
| Chis150 | most of the Clostridium histolyticum group (Clostridium cluster I and II) |
| Lis-637 | Listeria spp., except L. grayi |
| Bmy843 | Bacillus |
| Ver620 | Verrucomicrobium |
| MIB661 | mouse intestinal bacteria |
| MIB724 | mouse intestinal bacteria |
| FNEC | Fusobacterium necrophorum |
| B6 | subgroup of Brucella spp. |
| B9 | subgroup of Brucella spp. |
| B13 | subgroup of Brucella spp. |
| Staph747 | Staphylococcus spp. |
| Eca58 | Enterococcus casseliflavus |
| Edr58 | Enterococcus durans |
| Ehr58 | Enterococcus hirae |
| Efm09 | Enterococcus faecium |
| Ema58i | Enterococcus malodoratus |
| Esasu58i | Enterococcus saccharolyticus, Enterococcus sulfureus |
| HEL274 | Helicobacter sp., Wolinella sp. |
| HEL717 | Helicobacter sp., Wolinella sp. |
| HEP642 | Helicobacter hepaticus |
| GAN1237 | Helicobacter ganmani |
| FUNU | Fusobacterium nucleatum/canifelinum |
| EICO | Eikenella corrodens |
| CARE | Campylobacter rectus |
| ProCo1264 | Ruminococcus productus and relatives |
| Csac67 | Clostridium saccharogumia |
| Ach-221 | Achromobacter xylosoxidans |
| Alc-476 | Alcaligenes faecalis |
| Pint649 | Prevotella intermedia |
| Pnig657 | Prevotella nigrescens |
| FUS664 | most Fusobacterium sp. |
| P(T)AFO | Tannerella forsythensis (Bacteroides forsythus) |
| POGI | Porphyromonas gingivalis and uncultured Porphyromonas |
| PRIN | Prevotella intermedia, Prevotella falsenii and uncultured Prevotella |
| Law1 | Lawsonia intracellularis |
