Microarray details
| Array name | RHC-PhyloChip |
| Array Description | Low-density oligonucleotide microarray (microchip) for identification of all recognized and yet-uncultivated members of the betaproteobacterial order Rhodocyclales (RHCs). The microarray contains 18-mer 16S rRNA-targeted oligonucleotide probes of parallel and hierarchical specificity (multiple probe concept). |
| Array technique | Oligonucleotide probes with a 15 dTTP spacer-element and amino-modification at the 5'-terminal end were spotted on aldehyde-group coated glass slides using a contact-spotting device. |
| Reference | 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales". Loy A, Schulz C, Lücker S, Schöpfer-Wendels A, Stoecker K, Baranyi C, Lehner A, Wagner M. Applied and environmental microbiology. 2005. |
| Probename | Name (Alm et al.) |
|---|---|
| AZA483 | S-*-Aza-0645-a-A-18 |
| EUB338 (Bact338) (bacterial) | S-D-Bact-0338-a-A-18 |
| EUB338 II (SBACT P 338) | S-*-BactP-0338-a-A-18 |
| EUB338 III (SBACT V 338) | S-*-BactV-0338-a-A-18 |
| H7-1014 | S-*-H7-1014-a-A-18 |
| OTU2-132 (ATDe132) | S-*-ATDe-0132-a-A-18 |
| STEBA1426 | S-*-Steba-1426-a-A-18 |
| ZRA23a (ZRA,ZOGLO647) | S-*-Zoglo-0647-a-A-18 |
| UNIV1389a | S-D-Univ-1389-a-A-18 |
| UNIV1389b | S-D-Univ-1389-b-A-18 |
| UNIV1389c | S-D-Univ-1389-c-A-18 |
| RHC175a | S-*-RHC-0175-a-A-18 |
| RHC439 | S-*-RHC-0439-a-A-18 |
| PAO651 (ACCBA651) | S-G-Accba-0651-a-A-18 |
| AZA1006 | S-*-Aza-1006-a-A-18 |
| RHC630 | S-*-RHC-0630-a-A-18 |
| RHC143 | S-*-RHC-0143-a-A-18 |
| DAF1030 | S-*-D.A.F-1030-a-A-18 |
| AZAR483 | S-*-Azar-0483-a-A-18 |
| AZA444 | S-*-Aza-0444-a-A-18 |
| AZTOLY452 | S-*-Az.toly-0452-a-A-18 |
| AZANBU228 | S-*-Az.an.bu-0228-a-A-18 |
| AZAN130 | S-S-Az.an-0130-a-A-18 |
| AZAN465 | S-S-Az.an-0465-a-A-18 |
| AZA463 | S-*-Aza-0463-a-A-18 |
| AZA835 | S-*-Aza-0835-a-A-18 |
| AZA452 | S-*-Aza-0452-a-A-18 |
| AZOA844 | S-*-Azoa-0844-a-A-18 |
| ATDe442 | S-*-ATDe-0442-a-A-18 |
| ATDe830 | S-*-ATDe-0830-a-A-18 |
| S3-486 | S-*-S3-0486-a-A-18 |
| A33-587 | S-*-A33-0587-a-A-18 |
| AZIND433 | S-S-Az.ind-0433-a-A-18 |
| AZIND449 | S-St-Az.ind-0449-a-A-18 |
| AZIND455 | S-St-Az.ind-0455-a-A-18 |
| AZCOM447 | S-S-Az.com.-0447-a-A-18 |
| THAU832 | S-*-Thau-0832-a-A-18 |
| THAU455a | S-*-Thau-0455-a-A-18 |
| THAU443 | S-*-Thau-0443-a-A-18 |
| THAU580 | S-*-Thau-0580-a-A-18 |
| THAU455b | S-*-Thau-0455-b-A-18 |
| THAU468 | S-*-Thau-0468-a-A-18 |
| THATE461 | S-*-Tha.te-0461-a-A-18 |
| DENAR176 | S-*-Denar-0176-a-A-18 |
| DENAR453 | S-*-Denar-0453-a-A-18 |
| DENAR845 | S-*-Denar-0845-a-A-18 |
| ZOGLO828 | S-*-Zoglo-0828-a-A-18 |
| ZOGLO455 | S-*-Zoglo-0455-a-A-18 |
| ZORAM211 | S-*-Zo.ram-0211-a-A-18 |
| ZORAM441 | S-*-Zo.ram-0441-a-A-18 |
| RHAC855 | S-*-RhAc-0855-a-A-18 |
| ACCBA443 | S-*-Accba-0443-a-A-18 |
| RHO828 | S-G-Rho-0828-a-A-18 |
| RHO842 | S-G-Rho-0842-a-A- |
| RHOTE1280 | S-*-Rho.te-1280-a-A-18 |
| AZP737 | S-G-Azp-0737-a-A-18 |
| AZP471 | S-G-Azp-0471-a-A-18 |
| AZP456 | S-G-Azp-0456-a-A-18 |
| DCMAG455 | S-S-Dcm.ag-0455-a-A-18 |
| DEMFE455 | S-*-Dem.Fe-0455-a-A-18 |
| AZV211 | S-G-Azv-0211-a-A-18 |
| AZVRE847 | S-*-Azv.re-0847-a-A-18 |
| STEBA468 | S-*-Steba-0468-a-A-18 |
| STEBA635 | S-*-Steba-0635-a-A-18 |
| STEBA643 | S-*-Steba-0643-a-A-18 |
| STEBA214 | S-*-Steba-0214-a-A-18 |
| QUACO135 | S-*-Quaco-0135-a-A-18 |
| BTWO663 | S-*-Btwo-0663-a-A-18 |
| ATD1459 | S-*-ATD-1459-a-A-18 |
| TH3 (AZTHA222,RHC222) | S-*-RHC-0222-a-A-18 |
| AZIN1023 | S-*-Az.in-1023-a-A-18 |
| TH14 (RHC175b) | S-*-RHC-0175-b-A-18 |
| AZA1252 | S-*-Aza-1252-a-A-18 |
| ATDe467 | S-*-ATDe-0467-a-A-18 |
| ZOGLO1416 | S-G-Zoglo-1416-a-A-18 |
| ACCBA651 | S-*-Accba-0651-a-A-18 |
| ACCBA455 | S-*-Accba-0455-a-A-18 |
| ACCBA846 | S-*-Accba-846-a-A-18 |
| STEBA448 | S-*-Steba-0448-a-A-18 |
| Azo644 (AZA645) | S-*-Aza-0645-a-A-18 |
| A08KA458 | S-*-A08KA-0459-a-A-18 |
Color codes
- Primer
- Probes used for FISH
