Microarray details
| Array name | SRP-PhyloChip |
| Array Description | Low-density oligonucleotide microarray (microchip) for identification of all recognized lineages of sulfate-reducing prokaryotes (SRPs). The microarray contains 142 different 18-mer oligonucleotide probes of parallel and hierarchical specificity (multiple probe concept) targeting the 16S rRNA (gene) of all bacterial and archeal SRPs. |
| Array technique | Oligonucleotide probes with a 15 dTTP spacer-element and amino-modification at the 5'-terminal end were spotted on aldehyde-group coated glass slides using a contact-spotting device. |
| Reference | Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J, Schleifer KH, Wagner M. Applied and environmental microbiology. 2002. |
| Probename | Name (Alm et al.) |
|---|---|
| 804(Dsb804) | S-*-Dsb-0804-a-A-18 |
| D-acet1027r (DFACE1028) | S-S-Df.ace-1028-a-A-18 |
| DCC209 | S-S-Dcc.mv-0209-a-A-18 |
| DCC868 | S-*-Dsb-0868-a-A-18 |
| DSBAC355 | |
| DSC193 | S-*-Dsb-0193-a-A-18 |
| DSD131 (DSVAE131) | S-S-Dsv.ae-0131-a-A-18 |
| DSR651 | S-*-Dsb-0651-a-A-18 |
| DSS658 | S-*-Dsb-0658-a-A-18 |
| DSV1292 | S-*-Dsv-1292-a-A-18 |
| EUB338 (Bact338) (bacterial) | S-D-Bact-0338-a-A-18 |
| EUB338 II (SBACT P 338) | S-*-BactP-0338-a-A-18 |
| EUB338 III (SBACT V 338) | S-*-BactV-0338-a-A-18 |
| LGC354A | |
| LGC354B | |
| LGC354C | |
| SRB385 (SRB) | S-*-Srb-0385-a-A-18 |
| SRB385Db | |
| SYN835 | |
| UNIV1389a | S-D-Univ-1389-a-A-18 |
| UNIV1389b | S-D-Univ-1389-b-A-18 |
| UNIV1389c | S-D-Univ-1389-c-A-18 |
| DSM194 | S-G-Dsm-0194-a-A-18 |
| DSM213 | S-G-Dsm-0213-a-A-18 |
| DSHRE830 | S-S-Dsh.re-0830-a-A-18 |
| DSHRE995 | S-S-Dsh.re-0995-a-A-18 |
| DSHRE1243 | S-S-Dsh.re-1243-a-A-18 |
| DFMI227a | S-*-DfmI-0227-a-A-18 |
| DFMI227b | S-*-DfmI-0227-b-A-18 |
| DFMI210 | S-*-DfmI-0210-a-A-18 |
| DFMI229 | S-*-DfmI-0229-a-A-18 |
| DFMIa641 | S-*-DfmIa-0641-a-A-18 |
| DFMIb726 | S-*-DfmIb-0726-a-A-18 |
| DFMIc841 | S-*-DfmIc-0841-a-A-18 |
| DFMIc1012 | S-*-DfmIc-1012-a-A-18 |
| DFMIc1119 | S-*-DfmIc-1119-a-A-18 |
| DFMIc1138 | S-*-DfmIc-1138-a-A-18 |
| DFMId436 | S-*-DfmId-0436-a-A-18 |
| DFMId625 | S-*-DfmId-0625-a-A-18 |
| DFMId996 | S-*-DfmId-0996-a-A-18 |
| DFMId1117 | S-*-DfmId-1117-a-A-18 |
| DFACE199 | S-S-Df.ace-0199-a-A-18 |
| ARCH917 | S-D-Arch-0917-a-A-18 |
| DELTA495a | S-C-dProt-0495-a-A-18 |
| DELTA495b | S-*-dProt-0495-b-A-18 |
| DELTA495c | S-*-dProt-0495-c-A-18 |
| NTSPA714 | S-*-Ntspa-714-a-A-18 |
| DSB706 | S-*-Dsb-0706-a-A-18 |
| DSB230 | S-*-Dsb-0230-a-A-18 |
| DSTAL131 | S-G-Dstal-0131-a-A-18 |
| DSTAL213 | S-G-Dstal-0213-a-A-18 |
| DSTAL645 | S-G-Dstal-0645-a-A-18 |
| DSTAL732 | S-G-Dstal-0732-a-A-18 |
| DSTAL835 | S-G-Dstal-0835-a-A-18 |
| DSRHP185 | S-*-Dsrhp-0185-a-A-18 |
| DSBB228 | S-G-Dsbb-0228-a-A-18 |
| DSBB660 | S-G-Dsbb-0660-a-A-18 |
| DSB986 | S-*-Dsb-0986-a-A-18 |
| DSB1030 | S-*-Dsb-1030-a-A-18 |
| DSB1240 | S-*-Dsb-1240-a-A-18 |
| DSB623a | S-*-Dsb-0623-a-A-18 |
| DSB623b | S-*-Dsb-0623-b-A-18 |
| DSBLA623 | S-S-Dsb.la-0623-a-A-18 |
| DSBACL143 | S-G-Dsbacl-0143-a-A-18 |
| DSBACL225 | S-G-Dsbacl-0225-a-A-18 |
| DSBACL317 | S-G-Dsbacl-0317-a-A-18 |
| DSBACL1268 | S-G-Dsbacl-1268-a-A-18 |
| DSBACL1434 | S-G-Dsbacl-1434-a-A-18 |
| DSB674 | S-*-Dsb-0674-a-A-18 |
| DSB220 | S-*-Dsb-0220-a-A-18 |
| DSBM1239 | S-*-Dsbm-1239-a-A-18 |
| DSFRG211 | S-G-Dsfrg-0211-a-A-18 |
| DSFRG445 | S-G-Dsfrg-0445-a-A-18 |
| DSFRG1030 | S-G-Dsfrg-1030-a-A-18 |
| DSSDBM194 | S-*-DssDbm-0194-a-A-18 |
| DSSDBM217 | S-*-DssDbm-0217-a-A-18 |
| DSSDBM998 | S-*-DssDbm-0998-a-A-18 |
| DSSDBM1286 | S-*-DssDbm-1286-a-A-18 |
| DSBMIN218 | S-S-Dsbm.in-0218-a-A-18 |
| DSNISH179 | S-S-Dsn.ish-0179-a-A-18 |
| DSNISH442 | S-S-Dsn.ish-0442-a-A-18 |
| DSNISH1001 | S-S-Dsn.ish-1001-a-A-18 |
| DSN658 | S-*-Dsn-0658-a-A-18 |
| DSBOSA445 | S-S-Dsbo.sa-0445-a-A-18 |
| DSMON95 | S-*-Dsmon-0095-a-A-18 |
| DSMON1421 | S-*-Dsmon-1421-a-A-18 |
| SYBAC986 | S-*-Sybac-0986-a-A-18 |
| DSACI175 | S-G-Dsaci-0175-a-A-18 |
| DSACI207 | S-G-Dsaci-0207-a-A-18 |
| TDRNO448 | S-S-Tdr.no-0448-a-A-18 |
| TDRNO1030 | S-S-Tdr.no-1030-a-A-18 |
| TDRNO1443 | S-S-Tdr.no-1443-a-A-18 |
| DSV686 | S-*-Dsv-0686-a-A-18 |
| DSV698 | S-*-Dsv-0698-a-A-18 |
| DVDAPC872 | S-*-Dv.d.a.p.c-0872-a-A-18 |
| DVHO130 | S-*-Dv.h.o-0130-a-A-18 |
| DVHO733 | S-*-Dv.h.o-0733-a-A-18 |
| DVHO831 | S-*-Dv.h.o-0831-a-A-18 |
| DVHO1424 | S-*-Dv.h.o-1424-a-A-18 |
| DVAA1111 | S-*-Dv.a.a-1111-a-A-18 |
| DVGL199 | S-*-Dv.g.l-0199-a-A-18 |
| DVGL445 | S-*-Dv.g.l-0445-a-A-18 |
| DVGL1151 | S-*-Dv.g.l-1151-a-A-18 |
| DVGL1421 | S-*-Dv.g.l-1421-a-A-18 |
| DSV820 | S-*-Dsv-0820-a-A-18 |
| DVSZ849 | S-*-Dv.s.z-0849-a-A-18 |
| DVIG448 | S-*-Dv.i.g-0448-a-A-18 |
| DVIG468 | S-*-Dv.i.g-0468-a-A-18 |
| DSV651 | S-*-Dsv-0651-a-A-18 |
| DVFABS153 | S-*-Dv.f.a.b.s-0153-a-A-18 |
| DVFABS653 | S-*-Dv.f.a.b.s-0653-a-A-18 |
| DVFABS1351 | S-*-Dv.f.a.b.s-1351-a-A-18 |
| DVLVT139 | S-*-Dv.l.v.t-0139-a-A-18 |
| DVLVT175 | S-*-Dv.l.v.t-0175-a-A-18 |
| DVLT131 | S-*-Dv.l.t-0131-a-A-18 |
| DVLT986 | S-*-Dv.l.t-0986-a-A-18 |
| DVLT1027 | S-*-Dv.l.t-1027-a-A-18 |
| DFACE438 | S-S-Df.ace-0438-a-A-18 |
| DFACE995 | S-S-Df.ace-0995-a-A-18 |
| DFACE1436 | S-S-Df.ace-1436-a-A-18 |
| DFMIf126 | S-*-DfmIf-0126-a-A-18 |
| DFMII1107 | S-*-DfmII-1107-a-A-18 |
| DFMII1281 | S-*-DfmII-1281-a-A-18 |
| TDSV601 | S-*-Tdsv-0601-a-A-18 |
| Tdsulfo848 (TDSV849) | S-*-Tdsulfo-0848-a-A-18 (S-*-Tdsv-0849-a-A-18) |
| TDSV1326 | S-*-Tdsv-1326-a-A-18 |
| TDSBM1282 | S-P-Tdsbm-1282-a-A-18 |
| TDSBM353 | S-*-Tdsbm-0353-a-A-18 |
| TDSBM652 | S-*-Tdsbm-0652-a-A-18 |
| ARGLO37 | S-G-Arglo-0037-a-A-18 |
| ARGLO276 | S-G-Arglo-0276-a-A-18 |
| ARGLO576 | S-G-Arglo-0576-a-A-18 |
| ARGLO972 | S-G-Arglo-0972-a-A-18 |
| SYBAC697 | S-*-Sybac-0697-a-A-18 |
| SYBAC587a | S-*-Sybac-0587-a-A-18 |
| SYBAC587b | S-*-Sybac-0587-b-A-18 |
| DSMON999 | S-*-Dsmon-0999-a-A-18 |
| DSMON1283 | S-*-Dsmon-1283-a-A-18 |
| DSMON447 | S-*-Dsmon-0447-a-A-18 |
| DSMON468a | S-*-Dsmon-0468-a-A-18 |
| DSMON446 | S-*-Dsmon-0446-a-A-18 |
| DSMON468b | S-*-Dsmon-0468-b-A-18 |
Color codes
- Primer
- Probes used for FISH
