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Probes/primers found for taxon: Proteobacteria
Hit typeShort nameName (Alm et al.)Specificity
ExactGAM42a_A1041_A1040Representatives of the Xanthomonas group and the Alphaproteobacteria, Brevundimonas diminuta
SpecALF1BS-Sc-aProt-0019-a-A-17Alphaproteobacteria, some Deltaproteobacteria, Spirochaetes
SpecALF4-1322alpha4-subgroup of Proteobacteria
SpecALF682S-Sc-aProt-0682-a-A-18Alphaproteobacteria from sludge anaerobic digesters
SpecALF73asome Alphaproteobacteria
SpecALF968Alphaproteobacteria, except of Rickettsiales
SpecAlvi2Unidentified Epsilonproteobacteria affiliated to Alvinella
SpecAlvi3Unidentified Epsilonproteobacteria affiliated to Alvinella
SpecAlvi4Unidentified Epsilonproteobacteria affiliated to Alvinella
SpecAlvi5Unidentified Epsilonproteobacteria affiliated to Alvinella
SpecArco2Unidentified Epsilonproteobacteria affiliated to Arcobacter
Specb-AO233Betaproteobacterial ammonia-oxidizing bacteria
Specb1273mealybug betaproteobacterial endosymbionts
Specb162mealybug betaproteobacterial endosymbionts
Specb886mealybug betaproteobacterial endosymbionts
Specb91mealybug betaproteobacterial endosymbionts
SpecBET42aL-C-bProt-1027-a-A-17Betaproteobacteria
SpecBET940Betaproteobacteria (excepted Comamonadaceae, Nitrosomonadaceae and Methylophilaceae)
SpecBeta1Betaproteobacteria
SpecBeta2Betaproteobacteria
SpecBeta3Betaproteobacteria
SpecBeta4Betaproteobacteria
SpecBetthio1001L-G-bThiob-1001-a-A-21Betaproteobacterial Thiobacilli
SpecBONE23Abeta1-group of Betaproteobacteria
SpecBSC0459acid mine drainage beta-proteobacterial clones
SpecDELTA495aS-C-dProt-0495-a-A-18Most Deltaproteobacteria and most Gemmatimonadetes
SpecDELTA495bS-*-dProt-0495-b-A-18some Deltaproteobacteria
SpecDELTA495cS-*-dProt-0495-c-A-18some Deltaproteobacteria
SpecDSBO224Desulfobotulus sapovorans, Desulfovibrio fairfieldensis, and other Deltaproteobacteria
SpecE1e3 1150S-*-Ualp-1150-a-A-18some unclassified Alphaproteobacteria
SpecEp1Uncultured Epsilonproteobacteria affiliated to Nautiliaceae
SpecEpsi1Uncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira
SpecEpsi3Uncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira
SpecEPSY1384S-C-eProt-1384-a-A-18Epsilonproteobacteria
SpecEPSY549S-C-eProt-0549-a-A-18Epsilonproteobacteria
SpecEPSY914S-C-eProt-0914-a-A-18Epsilonproteobacteria
SpecEUB338_VS-D-Bact-0338-a-A-18Candidatus Cyrtobacter comes some Chloroflexi some Firmicutes some Proteobacteria
Specgam1-1246“Candidatus Gilliamella apicola” or Gamma-1 (symbiotic Gammaproteobacteria phylotype in honey bee)
SpecGam1019S-S-g-Prot-1019-a-A-18phosphate accumulating bacteria (Gammaproteobacteria)
SpecGam1278S-S-g-Prot-1278-a-A-20phosphate accumulating bacteria (Gammaproteobacteria)
SpecGAM42aL-C-gProt-1027-a-A-17Gammaproteobacteria
SpecGBnovel gammaproteobacterial group
SpecGB_1 and 2novel gammaproteobacterial group
SpecGB_2novel gammaproteobacterial group
SpecGB_3novel gammaproteobacterial group
SpecGB_4novel gammaproteobacterial group
SpecGB_5novel gammaproteobacterial group
SpecGB_6 (Gam1019)novel gammaproteobacterial group
SpecGB_7novel gammaproteobacterial group
SpecGB_G1 (GAOQ989)novel gammaproteobacterial group
SpecGB_G2novel gammaproteobacterial group
SpecI. leu. (IleuSYM581)Gammaproteobacterial symbiont of Inanidrilus leukodermatus
SpecLKC1006S-*-eProt-1006-a-A-18Epsilonproteobacterial group II from Lower Kane Cave
SpecLKC59S-*-eProt-0059-a-A-18Epsilonproteobacterial group I from Lower Kane Cave
SpecNITROSO4EBetaproteobacterial ammonia-oxidizing bacteria
SpecNOR1-56NOR1 lineage (Gammaproteobacteria)
SpecNOR2-1453NOR2 cluster group A (Gammaproteobacteria)
SpecNOR5-130NOR5 isolate KT71 (Gammaproteobacteria)
SpecNOR5-730NOR5 cluster (Gammaproteobacteria)
SpecNost993S-*-Nost-993-a-A-18Filamentous Alphaproteobacteria
SpecNsc825S-*-Nsc-0825-a-A-18betaproteobacterial AOB
SpecNscoc128S-*-Nscoc-128-a-A-18Nitrosococcus oceani, N. halophilus (Gammaproteobacteria)
SpecNso1225S-F-bAOB-1224-a-A-20Betaproteobacterial ammonia-oxidizing bacteria
SpecNso190S-F-bAOB-0189-a-A-19Betaproteobacterial ammonia-oxidizing bacteria
SpecO. tan. (OtanSYM581)Gammaproteobacterial symbiont of Olavius tantalus
SpecOalgDEL136Deltaproteobacterial symbiont of Olavius algarvensis
SpecOalgGAM445Gammaproteobacterial, sulfur-oxidizing symbiont of Olavius algarvensis
SpecOcraDEL1Deltaproteobacterial symbiont 1 of Olavius crassitunicatus
SpecOcraDEL2Deltaproteobacterial symbiont 2 of Olavius crassitunicatus
SpecOcraDEL3Deltaproteobacterial symbiont 3 of Olavius crassitunicatus
SpecPPx1002S-*-PPx-1002-a-A-18Filamentous Alphaproteobacteria
SpecPTB-all/646Alphaproteobacterial clade (all PTB)
SpecR-BT065subgroup of Betaproteobacteria
SpecSBR9-1aS-D-s91a-0578-b-A-20Alphaproteobacterial SBR9 clone 1 (AY254694)
SpecSBR9-1bS-D-s91a-0778-b-A-18Alphaproteobacterial SBR9 clone 1 (AY254694)
SpecSUL90S-*-Sul-0090-a-A-18Subgroup of Epsilonproteobacteria (Uncultured Helicobacteraceae, Clone GD17b, Clone GD17a)
SpecT25-1028clone T25 and T19 of a subgroup within the Betaproteobacteria
SpecT25-220clone T25 and other clones of a subgroup within the Betaproteobacteria, not clone T19
SpecT28-1435clone T28 and T29 of a subgroup within the Alphaproteobacteria
SpecT28-649clone T28 and T29 of a subgroup within the Alphaproteobacteria, Sphingomonas capsulata
SpecThio-1032S-*-Thio-1032-a-A-18some Thiobacillus and some unclassified Betaproteobacteria
SpecUalp-1109S-*-Ualp-1109-a-A-18some unclassified Alphaproteobacteria
SpecUbet-0834S-*-Ubet-0834-a-A-18some unclassified Betaproteobacteria
SpecuBet-0984S-*-uBet-0984-a-A-18some unclassified Betaproteobacteria
SpecUbet-0990S-*-Ubet-0990-a-A-21some unclassified Betaproteobacteria
SpecUNIV1389aS-D-Univ-1389-a-A-18Bacteria, not Epsilonproteobacteria
SpecWJ20646acidophilic gamma-Proteobacteria WJ2 and PK51 and some acid mine drainage clones
SpecXenoGam441Xenoturbella bocki gammaproteobacterial endosymbiont and relatives
SpecXenoGam666Xenoturbella bocki gammaproteobacterial endosymbiont and relatives
SpecXenoGam727Xenoturbella bocki gammaproteobacterial endosymbiont and relatives
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