List of papers

Reference
"Candidatus anadelfobacter veles" and "Candidatus cyrtobacter comes," two new rickettsiales species hosted by the protist ciliate Euplotes harpa (Ciliophora, Spirotrichea). Vannini C, Ferrantini F, Schleifer KH, Ludwig W, Verni F, Petroni G. Applied and environmental microbiology. 2010.
"Candidatus Paraholospora nucleivisitans", an intracellular bacterium in Paramecium sexaurelia shuttles between the cytoplasm and the nucleus of its host. Eschbach E, Pfannkuchen M, Schweikert M, Drutschmann D, Brümmer F, Fokin S, Ludwig W, Görtz HD. Systematic and applied microbiology. 2009.
"Candidatus Thiobios zoothamnicoli," an ectosymbiotic bacterium covering the giant marine ciliate Zoothamnium niveum. Rinke C, Schmitz-Esser S, Stoecker K, Nussbaumer AD, Molnár DA, Vanura K, Wagner M, Horn M, Ott JA, Bright M. Applied and environmental microbiology. 2006.
"Endomicrobia": cytoplasmic symbionts of termite gut protozoa form a separate phylum of prokaryotes. Stingl U, Radek R, Yang H, Brune A. Applied and environmental microbiology. 2005.
'Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants. Nguyen HT, Nielsen JL, Nielsen PH. Environmental microbiology. 2012.
'Candidatus Rhabdochlamydia porcellionis', an intracellular bacterium from the hepatopancreas of the terrestrial isopod Porcellio scaber (Crustacea: Isopoda). Kostanjsek R, Strus J, Drobne D, Avgustin G. International journal of systematic and evolutionary microbiology. 2004.
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16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales". Loy A, Schulz C, Lücker S, Schöpfer-Wendels A, Stoecker K, Baranyi C, Lehner A, Wagner M. Applied and environmental microbiology. 2005.
16S rRNA gene-based phylogenetic microarray for simultaneous identification of members of the genus Burkholderia. Schönmann S, Loy A, Wimmersberger C, Sobek J, Aquino C, Vandamme P, Frey B, Rehrauer H, Eberl L. Environmental microbiology. 2009.
16S rRNA Targeted Probes for the Identification of Bacterial Strains Isolated from Cultures of the Toxic Dinoflagellate Alexandrium tamarense. Groben R, Doucette GJ, Kopp M, Kodama M, Amann R, Medlin LK. Microbial ecology. 2000.
16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides. Weller R, Glöckner FO, Amann R. Systematic and applied microbiology. 2000.
16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Schmid M, Schmitz-Esser S, Jetten M, Wagner M. Environmental microbiology. 2001.
A bacterium belonging to the Rickettsiaceae family inhabits the cytoplasm of the marine ciliate Diophrys appendiculata (Ciliophora, Hypotrichia). Vannini C, Petroni G, Verni F, Rosati G. Microbial ecology. 2005.
A CARD-FISH protocol for the identification and enumeration of cyanobacterial akinetes in lake sediments. Ramm J, Lupu A, Hadas O, Ballot A, Rücker J, Wiedner C, Sukenik A. FEMS microbiology ecology. 2012.
A fluorescently-labelled r-RNA targeted oligonucleotide probe for the in situ detection of G-bacteria of the genus Amaricoccus in activated sludge. Maszenan A, Seviour RJ, Patel BK, Wanner J. Journal of applied microbiology. 2000.
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, Daims H, Wagner M. Proceedings of the National Academy of Sciences of the United States of America. 2008.
A nested array of rRNA targeted probes for the detection and identification of enterococci by reverse hybridization. Behr T, Koob C, Schedl M, Mehlen A, Meier H, Knopp D, Frahm E, Obst U, Schleifer K, Niessner R, Ludwig W. Systematic and applied microbiology. 2000.
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO. Nature. 2002.
A selective medium and a specific probe for detection of Vibrio vulnificus. Cerdà-Cuéllar M, Jofre J, Blanch AR. Applied and environmental microbiology. 2000.
Abundance and short-term temporal variability of fecal microbiota in healthy dogs. Garcia-Mazcorro JF, Dowd SE, Poulsen J, Steiner JM, Suchodolski JS. MicrobiologyOpen. 2012.
Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency. Warnecke F, Sommaruga R, Sekar R, Hofer JS, Pernthaler J. Applied and environmental microbiology. 2005.
Acetogenic and sulfate-reducing bacteria inhabiting the rhizoplane and deep cortex cells of the sea grass Halodule wrightii. Küsel K, Pinkart HC, Drake HL, Devereux R. Applied and environmental microbiology. 1999.
Adhesion of Lactobacillus plantarum 423 and Lactobacillus salivarius 241 to the intestinal tract of piglets, as recorded with fluorescent in situ hybridization (FISH), and production of plantaricin 423 by cells colonized to the ileum. Maré L, Wolfaardt GM, Dicks LM. Journal of applied microbiology. 2006.
Advantage of using inosine at the 3' termini of 16S rRNA gene universal primers for the study of microbial diversity. Ben-Dov E, Shapiro OH, Siboni N, Kushmaro A. Applied and environmental microbiology. 2006.
An update and optimisation of oligonucleotide probes targeting methanogenic Archaea for use in fluorescence in situ hybridisation (FISH). Crocetti G, Murto M, Björnsson L. Journal of microbiological methods. 2006.
Anaerobic utilization of alkylbenzenes and n-alkanes from crude oil in an enrichment culture of denitrifying bacteria affiliating with the beta-subclass of Proteobacteria. Rabus R, Wilkes H, Schramm A, Harms G, Behrends A, Amann R, Widdel F. Environmental microbiology. 1999.
Analysis of 16S libraries of mouse gastrointestinal microflora reveals a large new group of mouse intestinal bacteria. Salzman NH, de Jong H, Paterson Y, Harmsen HJ, Welling GW, Bos NA. Microbiology (Reading, England). 2002.
Analysis of beta-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing Stephen JR, Kowalchuk GA, Bruns MAV, McCaig AE, Phillips CJ, Embley TM, Prosser JI. Applied and environmental microbiology. 1998.
Analysis of diversity and activity of sulfate-reducing bacterial communities in sulfidogenic bioreactors using 16S rRNA and dsrB genes as molecular markers. Dar SA, Yao L, van Dongen U, Kuenen JG, Muyzer G. Applied and environmental microbiology. 2007.
Antibiotic-resistant soil bacteria in transgenic plant fields. Demanèche S, Sanguin H, Poté J, Navarro E, Bernillon D, Mavingui P, Wildi W, Vogel TM, Simonet P. Proceedings of the National Academy of Sciences of the United States of America. 2008.
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. Peplies J, Lau SC, Pernthaler J, Amann R, Glöckner FO. Environmental microbiology. 2004.
Application of a strain-specific rRNA oligonucleotide probe targeting Pseudomonas fluorescens Ag1 in a mesocosm study of bacterial release into the environment. Boye M, Ahl T, Molin S. Applied and environmental microbiology. 1995.
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Manz W, Amann R, Ludwig W, Vancanneyt M, Schleifer KH. Microbiology (Reading, England). 1996.
Application of rRNA-based probes for observing marine nanoplanktonic protists. Lim EL, Amaral LA, Caron DA, DeLong EF. Applied and environmental microbiology. 1993.
Application of sequence-specific labeled 16S rRNA gene oligonucleotide probes for genetic profiling of cyanobacterial abundance and diversity by array hybridization. Rudi K, Skulberg OM, Skulberg R, Jakobsen KS. Applied and environmental microbiology. 2000.
Archaeal diversity in Icelandic hot springs. Kvist T, Ahring BK, Westermann P. FEMS microbiology ecology. 2007.
Arcobacter-specific and Arcobacter butzleri-specific 16S rRNA-based DNA probes. Wesley IV, Schroeder-Tucker L, Baetz AL, Dewhirst FE, Paster BJ. Journal of clinical microbiology. 1995.
Assessment of the microbial diversity at the surface of Livarot cheese using culture-dependent and independent approaches. Mounier J, Monnet C, Jacques N, Antoinette A, Irlinger F. International journal of food microbiology. 2009.
Bacterial communities in petroleum oil in stockpiles. Yoshida N, Yagi K, Sato D, Watanabe N, Kuroishi T, Nishimoto K, Yanagida A, Katsuragi T, Kanagawa T, Kurane R, Tani Y. Journal of bioscience and bioengineering. 2005.
Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds. Stoffels M, Amann R, Ludwig W, Hekmat D, Schleifer KH. Applied and environmental microbiology. 1998.
Bacterial taxa abundance pattern in an industrial wastewater treatment system determined by the full rRNA cycle approach. Figuerola EL, Erijman L. Environmental microbiology. 2007.
Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay. Allen MA, Goh F, Burns BP, Neilan BA. Geobiology. 2009.
Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Berry D, Ben Mahfoudh K, Wagner M, Loy A. Applied and environmental microbiology. 2011.
Betaproteobacterial symbionts of the ciliate Euplotes: origin and tangled evolutionary path of an obligate microbial association. Vannini C, Ferrantini F, Ristori A, Verni F, Petroni G. Environmental microbiology. 2012.
Biodiversity and emerging biogeography of the neutrophilic iron-oxidizing Zetaproteobacteria. McAllister SM, Davis RE, McBeth JM, Tebo BM, Emerson D, Moyer CL. Applied and environmental microbiology. 2011.
Biomonitoring of pJP4-carrying Pseudomonas chlororaphis with Trb protein-specific antisera. Schmidt-Eisenlohr H, Rittig M, Preithner S, Baron C. Environmental microbiology. 2001.
Blooms of single bacterial species in a coastal lagoon of the southwestern Atlantic Ocean. Piccini C, Conde D, Alonso C, Sommaruga R, Pernthaler J. Applied and environmental microbiology. 2006.
Candidatus "Anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. Kartal B, Rattray J, van Niftrik LA, van de Vossenberg J, Schmid MC, Webb RI, Schouten S, Fuerst JA, Damsté JS, Jetten MS, Strous M. Systematic and applied microbiology. 2007.
Candidatus 'Brocadia fulgida': an autofluorescent anaerobic ammonium oxidizing bacterium. Kartal B, van Niftrik L, Rattray J, van de Vossenberg JL, Schmid MC, Sinninghe Damsté J, Jetten MS, Strous M. FEMS microbiology ecology. 2008.
Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut. Sato T, Hongoh Y, Noda S, Hattori S, Ui S, Ohkuma M. Environmental microbiology. 2009.
Candidatus Monilibacter spp., common bulking filaments in activated sludge, are members of Cluster III Defluviicoccus. Nittami T, McIlroy S, Seviour EM, Schroeder S, Seviour RJ. Systematic and applied microbiology. 2009.
Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Simek K, Pernthaler J, Weinbauer MG, Hornák K, Dolan JR, Nedoma J, Masín M, Amann R. Applied and environmental microbiology. 2001.
Characterization of bacterial community structure in a drinking water distribution system during an occurrence of red water. Li D, Li Z, Yu J, Cao N, Liu R, Yang M. Applied and environmental microbiology. 2010.
Characterization of chemoautotrophic bacterial symbionts in a gutless marine worm Oligochaeta, Annelida) by phylogenetic 16S rRNA sequence analysis and in situ hybridization. Dubilier N, Giere O, Distel DL, Cavanaugh CM. Applied and environmental microbiology. 1995.
Characterization of lactobacilli towards their use as probiotic adjuncts in poultry. Ehrmann MA, Kurzak P, Bauer J, Vogel RF. Journal of applied microbiology. 2002.
Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system. Wu JH, Liu WT, Tseng IC, Cheng SS. Microbiology (Reading, England). 2001.
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Liu WT, Marsh TL, Cheng H, Forney LJ. Applied and environmental microbiology. 1997.
Characterization of the microbial community of lotic organic aggregates ('river snow') in the Elbe River of Germany by cultivation and molecular methods. Böckelmanna U, Manza W, Neub TR, Szewzyka U. FEMS microbiology ecology. 2000.
Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Zheng D, Alm EW, Stahl DA, Raskin L. Applied and environmental microbiology. 1996.
Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. West NJ, Schönhuber WA, Fuller NJ, Amann RI, Rippka R, Post AF, Scanlan DJ. Microbiology (Reading, England). 2001.
Co-existence of physiologically similar sulfate-reducing bacteria in a full-scale sulfidogenic bioreactor fed with a single organic electron donor. Dar SA, Stams AJ, Kuenen JG, Muyzer G. Applied microbiology and biotechnology. 2007.
Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin. Blazejak A, Erséus C, Amann R, Dubilier N. Applied and environmental microbiology. 2005.
Coexistence of Wolbachia with Buchnera aphidicola and a secondary symbiont in the aphid Cinara cedri. Gómez-Valero L, Soriano-Navarro M, Pérez-Brocal V, Heddi A, Moya A, García-Verdugo JM, Latorre A. Journal of bacteriology. 2004.
Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase. Stoecker K, Bendinger B, Schöning B, Nielsen PH, Nielsen JL, Baranyi C, Toenshoff ER, Daims H, Wagner M. Proceedings of the National Academy of Sciences of the United States of America. 2006.
Collimonas fungivorans gen. nov., sp. nov., a chitinolytic soil bacterium with the ability to grow on living fungal hyphae. de Boer W, Leveau JH, Kowalchuk GA, Klein Gunnewiek PJ, Abeln EC, Figge MJ, Sjollema K, Janse JD, van Veen JA. International journal of systematic and evolutionary microbiology. 2004.
Colonization of barley (Hordeum vulgare) with Salmonella enterica and Listeria spp. Kutter S, Hartmann A, Schmid M. FEMS microbiology ecology. 2006.
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA. Applied and environmental microbiology. 1990.
Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Juretschko S, Timmermann G, Schmid M, Schleifer KH, Pommerening-Röser A, Koops HP, Wagner M. Applied and environmental microbiology. 1998.
Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean. Teira E, Reinthaler T, Pernthaler A, Pernthaler J, Herndl GJ. Applied and environmental microbiology. 2004.
Community analysis of biofilters using fluorescence in situ hybridization including a new probe for the Xanthomonas branch of the class Proteobacteria. Friedrich U, Naismith MM, Altendorf K, Lipski A. Applied and environmental microbiology. 1999.
Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Gieseke A, Purkhold U, Wagner M, Amann R, Schramm A. Applied and environmental microbiology. 2001.
Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine arctic sediments. Ravenschlag K, Sahm K, Knoblauch C, Jørgensen BB, Amann R. Applied and environmental microbiology. 2000.
Comparative analysis of human gut microbiota by barcoded pyrosequencing. Andersson AF, Lindberg M, Jakobsson H, Bäckhed F, Nyrén P, Engstrand L. PloS one. 2008.
Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria. Hovanec TA, DeLong EF. Applied and environmental microbiology. 1996.
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. Claesson MJ, O'Sullivan O, Wang Q, Nikkilä J, Marchesi JR, Smidt H, de Vos WM, Ross RP, O'Toole PW. PloS one. 2009.
Comparative study of bacterial groups within the human cecal and fecal microbiota. Marteau P, Pochart P, Doré J, Béra-Maillet C, Bernalier A, Corthier G. Applied and environmental microbiology. 2001.
Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease. Kyselková M, Kopecký J, Frapolli M, Défago G, Ságová-Marecková M, Grundmann GL, Moënne-Loccoz Y. The ISME journal. 2009.
Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Lin X, Wakeham SG, Putnam IF, Astor YM, Scranton MI, Chistoserdov AY, Taylor GT. Applied and environmental microbiology. 2006.
Concentration-dependent response of estrone-degrading bacterial community in activated sludge analyzed by microautoradiography-fluorescence in situ hybridization. Thayanukul P, Zang K, Janhom T, Kurisu F, Kasuga I, Furumai H. Water research. 2010.
Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. Wang Y, Qian PY. PloS one. 2009.
Criblamydia sequanensis, a new intracellular Chlamydiales isolated from Seine river water using amoebal co-culture. Thomas V, Casson N, Greub G. Environmental microbiology. 2006.
Cultivation and in situ detection of a thermophilic bacterium capable of oxidizing propionate in syntrophic association with hydrogenotrophic methanogens in a thermophilic methanogenic granular sludge. Imachi H, Sekiguchi Y, Kamagata Y, Ohashi A, Harada H. Applied and environmental microbiology. 2000.
Culturability and In situ abundance of pelagic bacteria from the North Sea. Eilers H, Pernthaler J, Glöckner FO, Amann R. Applied and environmental microbiology. 2000.
Culture independent and rapid identification of bacterial pathogens in necrotising fasciitis and streptococcal toxic shock syndrome by fluorescence in situ hybridisation. Trebesius K, Leitritz L, Adler K, Schubert S, Autenrieth IB, Heesemann J. Medical microbiology and immunology. 2000.
Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil. Rabus R, Fukui M, Wilkes H, Widdle F. Applied and environmental microbiology. 1996.
Demonstration of Brachyspira aalborgi lineages 2 and 3 in human colonic biopsies with intestinal spirochaetosis by specific fluorescent in situ hybridization. Jensen TK, Teglbjaerg PS, Lindboe CF, Boye M. Journal of medical microbiology. 2004.
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Ferris MJ, Muyzer G, Ward DM. Applied and environmental microbiology. 1996.
Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community. van den Heuvel RN, van der Biezen E, Jetten MS, Hefting MM, Kartal B. Environmental microbiology. 2010.
Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. Franke-Whittle IH, Klammer SH, Insam H. Journal of microbiological methods. 2005.
Design and application of oligonucleotide probes for fluorescent in situ identification of the filamentous bacterial morphotype Nostocoida limicola in activated sludge. Liu JR, Seviour RJ. Environmental microbiology. 2001.
Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens. DiChristina TJ, DeLong EF. Applied and environmental microbiology. 1993.
Design and application of two oligonucleotide probes for the identification of Geodermatophilaceae strains using fluorescence in situ hybridization (FISH). Urzì C, La Cono V, Stackebrandt E. Environmental microbiology. 2004.
Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities. Bathe S, Hausner M. BMC microbiology. 2006.
Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantitation of human faecal Bacteroides populations. Doré J, Sghir A, Hannequart-Gramet G, Corthier G, Pochart P. Systematic and applied microbiology. 1998.
Design and evaluation of a Lactobacillus group-specific ribosomal RNA-targeted hybridization probe and its application to the study of intestinal microecology in pigs. Sghir A, Antonopoulos D, Mackie RI. Systematic and applied microbiology. 1998.
Design and evaluation of group-specific oligonucleotide probes for quantitative analysis of intestinal ecosystems: their application to assessment of equine colonic microflora. Daly K, Shirazi-Beechey SP. FEMS microbiology ecology. 2003.
Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. Wang RF, Beggs ML, Robertson LH, Cerniglia CE. FEMS microbiology letters. 2002.
Design and performance of a 16S rRNA-targeted oligonucleotide probe for detection of members of the genus Bdellovibrio by fluorescence in situ hybridization. Mahmoud KK, McNeely D, Elwood C, Koval SF. Applied and environmental microbiology. 2007.
Design and uses of Bdellovibrio 16S rRNA-targeted oligonucleotides. Jurkevitch E, Ramati B. FEMS microbiology letters. 2000.
Design and validation of 16S rRNA probes to enumerate members of the Clostridium leptum subgroup in human faecal microbiota. Lay C, Sutren M, Rochet V, Saunier K, Doré J, Rigottier-Gois L. Environmental microbiology. 2005.
Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, Desantis TZ, Brodie EL, Malamud D, Poles MA, Pei Z. World journal of gastroenterology. 2010.
Design of species-specific oligonucleotide probes for the detection of Bacteroides and Parabacteroides by fluorescence in situ hybridization and their application to the analysis of mouse caecal Bacteroides-Parabacteroides microbiota. Momose Y, Park SH, Miyamoto Y, Itoh K. Journal of applied microbiology. 2011.
Desulfotomaculum genus- and subgenus-specific 16S rRNA hybridization probes for environmental studies. Hristova KR, Mau M, Zheng D, Aminov RI, Mackie RI, Gaskins HR, Raskin L. Environmental microbiology. 2000.
Detection and differentiation of chlamydiae by fluorescence in situ hybridization. Poppert S, Essig A, Marre R, Wagner M, Horn M. Applied and environmental microbiology. 2002.
Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris. Dedysh SN, Derakshani M, Liesack W. Applied and environmental microbiology. 2001.
Detection and identification of Candida species in experimentally infected tissue and human blood by rRNA-specific fluorescent in situ hybridization. Lischewski A, Kretschmar M, Hof H, Amann R, Hacker J, Morschhäuser J. Journal of clinical microbiology. 1997.
Detection and in situ identification of representatives of a widely distributed new bacterial phylum. Ludwig W, Bauer SH, Bauer M, Held I, Kirchhof G, Schulze R, Huber I, Spring S, Hartmann A, Schleifer KH. FEMS microbiology letters. 1997.
Detection of Desulfotomaculum in an Italian rice paddy soil by 16S ribosomal nucleic acid analyses. Stubner S, Meuser K. FEMS microbiology ecology. 2000.
Detection of Gallibacterium spp. in chickens by fluorescent 16S rRNA in situ hybridization. Bojesen AM, Christensen H, Nielsen OL, Olsen JE, Bisgaard M. Journal of clinical microbiology. 2003.
Detection of intracellular bacteria in the buds of Scotch pine (Pinus sylvestris L.) by in situ hybridization. Pirttilä AM, Laukkanen H, Pospiech H, Myllylä R, Hohtola A. Applied and environmental microbiology. 2000.
Detection of iron-depositing Pedomicrobium species in native biofilms from the Odertal National Park by a new, specific FISH probe. Braun B, Richert I, Szewzyk U. Journal of microbiological methods. 2009.
Detection of Ralstonia solanacearum, which causes brown rot of potato, by fluorescent in situ hybridization with 23S rRNA-targeted probes. Wullings BA, Van Beuningen AR, Janse JD, Akkermans AD. Applied and environmental microbiology. 1998.
Detection of the free-living forms of sulfide-oxidizing gill endosymbionts in the lucinid habitat (Thalassia testudinum environment). Gros O, Liberge M, Heddi A, Khatchadourian C, Felbeck H. Applied and environmental microbiology. 2003.
Development and application of 16S rRNA-targeted probes for detection of iron- and manganese-oxidizing sheathed bacteria in environmental samples. Siering PL, Ghiorse WC. Applied and environmental microbiology. 1997.
Development and application of small-subunit rRNA probes for assessment of selected Thiobacillus species and members of the genus Acidiphilium. Peccia J, Marchand EA, Silverstein J, Hernandez M. Applied and environmental microbiology. 2000.
Development and use of fluorescent 16S rRNA-targeted probes for the specific detection of Methylophaga species by in situ hybridization in marine sediments. Janvier M, Regnault B, Grimont P. Research in microbiology. 2003.
Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Sanguin H, Herrera A, Oger-Desfeux C, Dechesne A, Simonet P, Navarro E, Vogel TM, Moënne-Loccoz Y, Nesme X, Grundmann GL. Environmental microbiology. 2006.
Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups. Harmsen HJ, Wildeboer-Veloo AC, Grijpstra J, Knol J, Degener JE, Welling GW. Applied and environmental microbiology. 2000.
Development of 18S rRNA-targeted oligonucleotide probes for specific detection of Hartmannella and Naegleria in Legionella-positive environmental samples. Grimm D, Ludwig WF, Brandt BC, Michel R, Schleifer KH, Hacker J, Steinert M. Systematic and applied microbiology. 2001.
Development of a 16S rRNA gene-based prototype microarray for the detection of selected actinomycetes genera. Kyselková M, Kopecký J, Felföldi T, Cermák L, Omelka M, Grundmann GL, Moënne-Loccoz Y, Ságová-Marecková M. Antonie van Leeuwenhoek. 2008.
Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake. Arnds J, Knittel K, Buck U, Winkel M, Amann R. Systematic and applied microbiology. 2010.
Development of an oligonucleotide probe for Aureobasidium pullulans based on the small-subunit rRNA gene. Li S, Cullen D, Hjort M, Spear R, Andrews JH. Applied and environmental microbiology. 1996.
Development of an oligonucleotide probe targeting 16S rRNA and its application for detection and quantitation of the ruminal bacterium Synergistes jonesii in a mixed-population chemostat. McSweeney CS, Mackie RI, Odenyo AA, Stahl DA. Applied and environmental microbiology. 1993.
Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Wagner M, Erhart R, Manz W, Amann R, Lemmer H, Wedi D, Schleifer KH. Applied and environmental microbiology. 1994.
Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria. Daly K, Sharp RJ, McCarthy AJ. Microbiology (Reading, England). 2000.
Development of specific fluorescent oligonucleotide probes for in situ identification of wine lactic acid bacteria. Blasco L, Ferrer S, Pardo I. FEMS microbiology letters. 2003.
Diagnostic examination of human intestinal spirochetosis by fluorescent in situ hybridization for Brachyspira aalborgi, Brachyspira pilosicoli, and other species of the genus Brachyspira (Serpulina). Jensen TK, Boye M, Ahrens P, Korsager B, Teglbjaerg PS, Lindboe CF, Møller K. Journal of clinical microbiology. 2001.
Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes. Dedysh SN, Dunfield PF, Derakshani M, Stubner S, Heyer J, Liesack W. FEMS microbiology ecology. 2003.
Differentiation of methanosaeta concilii and methanosarcina barkeri in anaerobic mesophilic granular sludge by fluorescent In situ hybridization and confocal scanning laser microscopy Rocheleau S, Greer CW, Lawrence JR, Cantin C, Laramee L, Guiot SR. Applied and environmental microbiology. 1999.
Direct quantitative differentiation between Prevotella intermedia and Prevotella nigrescens in clinical specimens. Gmür R, Thurnheer T. Microbiology (Reading, England). 2002.
Discovery of commonly existing anode biofilm microbes in two different wastewater treatment MFCs using FLX Titanium pyrosequencing. Lee TK, Van Doan T, Yoo K, Choi S, Kim C, Park J. Applied microbiology and biotechnology. 2010.
Discovery of the novel candidate phylum "Poribacteria" in marine sponges. Fieseler L, Horn M, Wagner M, Hentschel U. Applied and environmental microbiology. 2004.
Discrepancies in the widely applied GAM42a fluorescence in situ hybridisation probe for Gammaproteobacteria. Siyambalapitiya N, Blackall LL. FEMS microbiology letters. 2005.
Distinct flavobacterial communities in contrasting water masses of the north Atlantic Ocean. Gómez-Pereira PR, Fuchs BM, Alonso C, Oliver MJ, van Beusekom JE, Amann R. The ISME journal. 2010.
Distribution of bacterial populations in a stratified fjord (Mariager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column. Ramsing NB, Fossing H, Ferdelman TG, Andersen F, Thamdrup B. Applied and environmental microbiology. 1996.
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Diversity and vertical distribution of cultured and uncultured Deltaproteobacteria in an intertidal mud flat of the Wadden Sea. Mussmann M, Ishii K, Rabus R, Amann R. Environmental microbiology. 2005.
Diversity of bacteria growing in natural mineral water after bottling. Loy A, Beisker W, Meier H. Applied and environmental microbiology. 2005.
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Enrichment of a mixed bacterial culture with a high polyhydroxyalkanoate storage capacity. Johnson K, Jiang Y, Kleerebezem R, Muyzer G, van Loosdrecht MC. Biomacromolecules. 2009.
Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge. Hesselmann RP, Werlen C, Hahn D, van der Meer JR, Zehnder AJ. Systematic and applied microbiology. 1999.
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Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Welch DM, Relman DA, Sogin ML. PLoS genetics. 2008.
Extensive set of 16S rRNA-based probes for detection of bacteria in human feces. Harmsen HJ, Raangs GC, He T, Degener JE, Welling GW. Applied and environmental microbiology. 2002.
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Identification of "Candidatus Thioturbo danicus," a microaerophilic bacterium that builds conspicuous veils on sulfidic sediments. Muyzer G, Yildirim E, van Dongen U, Kühl M, Thar R. Applied and environmental microbiology. 2005.
Identification of a novel acetate-utilizing bacterium belonging to Synergistes group 4 in anaerobic digester sludge. Ito T, Yoshiguchi K, Ariesyady HD, Okabe S. The ISME journal. 2011.
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Identification of Chromera velia by fluorescence in situ hybridization. Morin-Adeline V, Foster C, Slapeta J. FEMS microbiology letters. 2012.
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Identification of Enterococcus spp. based on specific hybridisation with 16S rDNA probes. Manero A, Blanch AR. Journal of microbiological methods. 2002.
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Identification of lactobacillus delbrueckii and subspecies by hybridization probes and PCR. Lick S, Brockmann E, Heller KJ. Systematic and applied microbiology. 2000.
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Identification of Meiothermus as the dominant genus in a storage system for spent nuclear fuel. Masurat P, Fru EC, Pedersen K. Journal of applied microbiology. 2005.
Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization(1). Jurgens G, Glöckner F, Amann R, Saano A, Montonen L, Likolammi M, Münster U. FEMS microbiology ecology. 2000.
Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probes. Gade D, Schlesner H, Glöckner FO, Amann R, Pfeiffer S, Thomm M. Microbial ecology. 2004.
Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation. Crocetti GR, Hugenholtz P, Bond PL, Schuler A, Keller J, Jenkins D, Blackall LL. Applied and environmental microbiology. 2000.
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Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture. González JM, Whitman WB, Hodson RE, Moran MA. Applied and environmental microbiology. 1996.
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Illumina-based analysis of microbial community diversity. Degnan PH, Ochman H. The ISME journal. 2012.
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In situ analysis of denitrifying toluene- and m-xylene-degrading bacteria in a diesel fuel-contaminated laboratory aquifer column. Hess A, Zarda B, Hahn D, Häner A, Stax D, Höhener P, Zeyer J. Applied and environmental microbiology. 1997.
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In situ detection of a virulence factor mRNA and 16S rRNA in Listeria monocytogenes. Wagner M, Schmid M, Juretschko S, Trebesius KH, Bubert A, Goebel W, Schleifer KH. FEMS microbiology letters. 1998.
In situ detection of an uncultured predominant bacillus in Dutch grassland soils. Felske A, Akkermans AD, De Vos WM. Applied and environmental microbiology. 1998.
In situ detection of novel Acidobacteria in microbial mats from a chemolithoautotrophically based cave ecosystem (Lower Kane Cave, WY, USA). Meisinger DB, Zimmermann J, Ludwig W, Schleifer KH, Wanner G, Schmid M, Bennett PC, Engel AS, Lee NM. Environmental microbiology. 2007.
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In situ identification of carboxymethyl cellulose-digesting bacteria in the rumen of cattle fed alfalfa or triticale. Kong Y, Xia Y, Seviour R, He M, McAllister T, Forster R. FEMS microbiology ecology. 2012.
In situ identification of cyanobacteria with horseradish peroxidase-labeled, rRNA-targeted oligonucleotide probes. Schönhuber W, Zarda B, Eix S, Rippka R, Herdman M, Ludwig W, Amann R. Applied and environmental microbiology. 1999.
In situ identification of keratin-hydrolyzing organisms in swine manure inoculated anaerobic digesters. Xia Y, Massé DI, McAllister TA, Beaulieu C, Talbot G, Kong Y, Seviour R. FEMS microbiology ecology. 2011.
In situ identification of Legionellaceae using 16S rRNA-targeted oligonucleotide probes and confocal laser scanning microscopy. Manz W, Amann R, Szewzyk R, Szewzyk U, Stenström TA, Hutzler P, Schleifer KH. Microbiology (Reading, England). 1995.
In situ identification of nocardioform actinomycetes in activated sludge using fluorescent rRNA-targeted oligonucleotide probes. Schuppler M, Wagner M, Schön G, Göbel UB. Microbiology (Reading, England). 1998.
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In situ visualization of high genetic diversity in a natural microbial community. Amann R, Snaidr J, Wagner M, Ludwig W, Schleifer KH. Journal of bacteriology. 1996.
Increased amount of Bifidobacterium thermacidophilum and Megasphaera elsdenii in the colonic microbiota of pigs fed a swine dysentery preventive diet containing chicory roots and sweet lupine. Mølbak L, Thomsen LE, Jensen TK, Bach Knudsen KE, Boye M. Journal of applied microbiology. 2007.
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Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Hugenholtz P, Tyson GW, Webb RI, Wagner AM, Blackall LL. Applied and environmental microbiology. 2001.
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Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton. Eilers H, Pernthaler J, Peplies J, Glöckner FO, Gerdts G, Amann R. Applied and environmental microbiology. 2001.
Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging. Nelson BP, Liles MR, Frederick KB, Corn RM, Goodman RM. Environmental microbiology. 2002.
Limitations of the widely used GAM42a and BET42a probes targeting bacteria in the Gammaproteobacteria radiation. Yeates C, Saunders AM, Crocetti GR, Blackall LL. Microbiology (Reading, England). 2003.
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Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea. Zubkov MV, Fuchs BM, Archer SD, Kiene RP, Amann R, Burkill PH. Environmental microbiology. 2001.
Long-term population dynamics of phototrophic sulfur bacteria in the chemocline of Lake Cadagno, Switzerland. Tonolla M, Peduzzi R, Hahn D. Applied and environmental microbiology. 2005.
Low intraspecific diversity in a polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond. Hahn MW, Pöckl M, Wu QL. Applied and environmental microbiology. 2005.
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Molecular analysis of bacterial microbiota in the gut of the termite Reticulitermes speratus (Isoptera; Rhinotermitidae). Hongoh Y, Ohkuma M, Kudo T. FEMS microbiology ecology. 2003.
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Molecular and physiological approaches to understand the ecology of methanol degradation during the biofiltration of air streams. Barcón T, Alonso-Gutiérrez J, Omil F. Chemosphere. 2012.
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Molecular identification of an uncultured bacterium ("morphotype R") in meromictic Lake Cadagno, Switzerland. Tonolla M, Bottinelli M, Demarta A, Peduzzi R, Hahn D. FEMS microbiology ecology. 2005.
Molecular identification of rickettsial endosymbionts in the non-phagotrophic volvocalean green algae. Kawafune K, Hongoh Y, Hamaji T, Nozaki H. PloS one. 2012.
Molecular phylogeny and in situ detection of the etiologic agent of necrotizing hepatopancreatitis in shrimp. Loy JK, Dewhirst FE, Weber W, Frelier PF, Garbar TL, Tasca SI, Templeton JW. Applied and environmental microbiology. 1996.
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Phylogenetic analysis and in situ identification of "Nostocoida limicola"-like filamentous bacteria in activated sludge from industrial wastewater treatment plants. Snaidr I, Beimfohr C, Levantesi C, Rossetti S, van der Waarde J, Geurkink B, Elkelboom D, Lemaitre M, Tandoi V. Water science and technology : a journal of the International Association on Water Pollution Research. 2002.
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Phylogenetic analysis identifies the 'megabacterium' of birds as a novel anamorphic ascomycetous yeast, Macrorhabdus ornithogaster gen. nov., sp. nov. Tomaszewski EK, Logan KS, Snowden KF, Kurtzman CP, Phalen DN. International journal of systematic and evolutionary microbiology. 2003.
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Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present at very low frequency in activated sludge. Snaidr J, Fuchs B, Wallner G, Wagner M, Schleifer KH, Amann R. Environmental microbiology. 1999.
Phylogeny of the filamentous bacterium Eikelboom Type 1851, and design and application of a 16S rRNA targeted oligonucleotide probe for its fluorescence in situ identification in activated sludge. Beer M, Seviour EM, Kong Y, Cunningham M, Blackall LL, Seviour RJ. FEMS microbiology letters. 2002.
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Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms. Neef A, Zaglauer A, Meier H, Amann R, Lemmer H, Schleifer KH. Applied and environmental microbiology. 1996.
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Quantification of the flavonoid-degrading bacterium Eubacterium ramulus in human fecal samples with a species-specific oligonucleotide hybridization probe. Simmering R, Kleessen B, Blaut M. Applied and environmental microbiology. 1999.
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Role of nitrogen fixation in the autecology of Polaromonas naphthalenivorans in contaminated sediments. Hanson BT, Yagi JM, Jeon CO, Madsen EM. Environmental microbiology. 2012.
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Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays. Warsen AE, Krug MJ, LaFrentz S, Stanek DR, Loge FJ, Call DR. Applied and environmental microbiology. 2004.
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Single-stranded conformational polymorphism for separation of mixed rRNAS (rRNA-SSCP): a new method for profiling microbial communities. MacGregor BJ, Amann R. Systematic and applied microbiology. 2006.
Species-specific oligonucleotide probes for five Bifidobacterium species detected in human intestinal microflora. Yamamoto T, Morotomi M, Tanaka R. Applied and environmental microbiology. 1992.
Specific and rapid detection by fluorescent in situ hybridization of bacteria in clinical samples obtained from cystic fibrosis patients. Hogardt M, Trebesius K, Geiger AM, Hornef M, Rosenecker J, Heesemann J. Journal of clinical microbiology. 2000.
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Specific detection of green sulfur bacteria by in situ hybridization with a fluorescently labeled oligonucleotide probe. Tuschak C, Glaeser J, Overmann J. Archives of microbiology. 1999.
Specific detection of Pseudomonas spp. in milk by fluorescence in situ hybridization using ribosomal RNA directed probes. Gunasekera TS, Dorsch MR, Slade MB, Veal DA. Journal of applied microbiology. 2003.
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Specific detection of viable Listeria monocytogenes in Spanish wastewater treatment plants by Fluorescent In Situ Hybridization and PCR. Moreno Y, Ballesteros L, García-Hernández J, Santiago P, González A, Ferrús MA. Water research. 2011.
Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G + C content. Meier H, Amann R, Ludwig W, Schleifer KH. Systematic and applied microbiology. 1999.
Spirochetes from digital dermatitis lesions in cattle are closely related to treponemes associated with human periodontitis. Choi BK, Nattermann H, Grund S, Haider W, Göbel UB. International journal of systematic bacteriology. 1997.
Structure and diversity of Gram-negative sulfate-reducing bacteria on rice roots. Scheid D, Stubner S. FEMS microbiology ecology. 2001.
Succession of sulfur-oxidizing bacteria in the microbial community on corroding concrete in sewer systems. Okabe S, Odagiri M, Ito T, Satoh H. Applied and environmental microbiology. 2007.
Sulfur-metabolizing bacterial populations in microbial mats of the Nakabusa hot spring, Japan. Kubo K, Knittel K, Amann R, Fukui M, Matsuura K. Systematic and applied microbiology. 2011.
Sulphide oxidation to elemental sulphur in a membrane bioreactor: performance and characterization of the selected microbial sulphur-oxidizing community. Vannini C, Munz G, Mori G, Lubello C, Verni F, Petroni G. Systematic and applied microbiology. 2008.
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Taxon-specific probes for the cellulolytic genus Fibrobacter reveal abundant and novel equine-associated populations. Lin C, Stahl DA. Applied and environmental microbiology. 1995.
The abundance of Zoogloea ramigera in sewage treatment plants. Rosselló-Mora RA, Wagner M, Amann R, Schleifer KH. Applied and environmental microbiology. 1995.
The candidate phylum 'Termite Group 1' of bacteria: phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists. Ohkuma M, Sato T, Noda S, Ui S, Kudo T, Hongoh Y. FEMS microbiology ecology. 2007.
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Daims H, Brühl A, Amann R, Schleifer KH, Wagner M. Systematic and applied microbiology. 1999.
The genus Caedibacter comprises endosymbionts of Paramecium spp. related to the Rickettsiales (Alphaproteobacteria) and to Francisella tularensis (Gammaproteobacteria). Beier CL, Horn M, Michel R, Schweikert M, Görtz HD, Wagner M. Applied and environmental microbiology. 2002.
The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Fierer N, Hamady M, Lauber CL, Knight R. Proceedings of the National Academy of Sciences of the United States of America. 2008.
The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function. Adamczyk J, Hesselsoe M, Iversen N, Horn M, Lehner A, Nielsen PH, Schloter M, Roslev P, Wagner M. Applied and environmental microbiology. 2003.
The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Juretschko S, Loy A, Lehner A, Wagner M. Systematic and applied microbiology. 2002.
The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract. Derrien M, Collado MC, Ben-Amor K, Salminen S, de Vos WM. Applied and environmental microbiology. 2008.
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. Dethlefsen L, Huse S, Sogin ML, Relman DA. PLoS biology. 2008.
The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Stingl U, Desiderio RA, Cho JC, Vergin KL, Giovannoni SJ. Applied and environmental microbiology. 2007.
The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: development of probes for Ruminococcus species and evidence for bacteriocin production. Odenyo AA, Mackie RI, Stahl DA, White BA. Applied and environmental microbiology. 1994.
Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. Rivière D, Desvignes V, Pelletier E, Chaussonnerie S, Guermazi S, Weissenbach J, Li T, Camacho P, Sghir A. The ISME journal. 2009.
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Two types of endosymbiotic bacteria in the enigmatic marine worm Xenoturbella bocki. Kjeldsen KU, Obst M, Nakano H, Funch P, Schramm A. Applied and environmental microbiology. 2010.
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Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Ginige MP, Hugenholtz P, Daims H, Wagner M, Keller J, Blackall LL. Applied and environmental microbiology. 2004.
Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Franks AH, Harmsen HJ, Raangs GC, Jansen GJ, Schut F, Welling GW. Applied and environmental microbiology. 1998.
Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Massana R, Murray AE, Preston CM, DeLong EF. Applied and environmental microbiology. 1997.
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Visualization of Helicobacter species within the murine cecal mucosa using specific fluorescence in situ hybridization. Chan V, Crocetti G, Grehan M, Zhang L, Danon S, Lee A, Mitchell H. Helicobacter. 2005.
What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. Fleming EJ, Langdon AE, Martinez-Garcia M, Stepanauskas R, Poulton NJ, Masland ED, Emerson D. PloS one. 2011.
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Zoothamnium mariella sp. nov., a marine, colonial ciliate with an atypcial growth pattern, and its ectosymbiont Candidatus Fusimicrobium zoothamnicola gen. nov., sp. nov

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