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List of all probes and primers

Short name Name (Alm et al.) Target Specificity
Aqua828S-*-Aqua-0828-a-A-1816S rRNAAquabacterium spp.
Pomo828S-*-Pomo-0828-a-A-1816S rRNAPolaromonas vacuolata
Gor596S-G-Gor-0596-a-A-2216S rRNAGordonia (Gordona)
Fibr225S-G-Fibr-0225-a-A-2116S rRNAFibrobacter
Fibr153S-G-Fibr-0153-a-S-1616S rRNAFibrobacter
Lchm20716S rRNALachnospira multiparus
804(Dsb804)S-*-Dsb-0804-a-A-1816S rRNASome Desulfobacteraceae
814(Dscoc814)S-*-Dscoc-0814-a-A-1816S rRNAFew Desulfobacteraceae
858FLS-G-Deino-0858-a-S-3516S rRNAgenus Deinococcus
ACA652 (ACA23A)S-G-Acin-0652-a-A-1816S rRNAAcinetobacter
Acdp821S-G-Acdp-0821-a-A-2416S rRNAAcidiphilium
Ade44116S rRNAAlcaligenes defragans
ALBO34a23S rRNABordetella spp., Alcaligenes spp. (sensu stricto)
ALF1BS-Sc-aProt-0019-a-A-1716S rRNAAlphaproteobacteria, some Deltaproteobacteria, Spirochaetes
ALF4-132216S rRNAalpha4-subgroup of Proteobacteria
ALF73a23S rRNAsome Alphaproteobacteria
ALF92116S rRNANevskia ramosa clone NO22
ALF96816S rRNAAlphaproteobacteria, except of Rickettsiales
Am445S-F-aMtr-0445-a-A-2816S rRNAa-Methanotrophs
Am976S-F-aMtr-0976-a-A-2016S rRNAa-Methanotrophs
ANAB16S rRNAAnabaena
APHA16S rRNAAphanizomenon
ARC34416S rRNAArchaea
ARCH915 (ARC915)S-D-Arch-0915-a-A-2016S rRNAArchaea
AT145816S rRNAAzoarcus-Thauera cluster
Azo125116S rRNAAzoarcus tolulyticus strains Tol-4, Td-1, Td-15, Td-17, Td-19, Td-21, A. evansii KB740, Azoarcus sp. strain pF6
AZA483S-*-Aza-0645-a-A-1816S rRNAAzoarcus cluster
BAC303S-*-Bacto-0303-a-A-1716S rRNAmost Bacteroidaceae and Prevotellaceae, some Porphyromonadaceae
BACSUCC16S rRNAFibrobacter succinogenes (Bacteroides succinogenes) NR9 and DR7
Bcv13b23S rRNABurkholderia vietnamensis, B. cepacia
BET42aL-C-bProt-1027-a-A-1723S rRNABetaproteobacteria
Bif1278S-G-Bif-1278-a-A-1716S rRNABifidobacterium spp.
LSPotu11021-1127S-*-Lsp-1127-a-A-2016S rRNALachnospiraceae OTU_11021
Bif164S-G-Bif-0164-a-A-1816S rRNABifidobacterium spp.
Bif662S-G-Bif-0662-a-A-1816S rRNABifidobacterium spp.
BONE23A16S rRNAbeta1-group of Betaproteobacteria
BTWO23A16S rRNAcompetitor for BONE23A
CF319a16S rRNAmost Flavobacteria, some Bacteroidetes, some Sphingobacteria
CF319b16S rRNAsome Flavobacteria and Sphingobacteria
CFB108216S rRNAmost members of the class Bacteroidetes
CFB28616S rRNAmost members of the genus Tannerella and the genus Prevotella of the class Bacteriodetes
CFB56316S rRNAmost Flavobacteria
CFB71916S rRNAmost members of the class Bacteriodetes, some Flavobacteria and Sphingobacteria
CFB97216S rRNAsome Flavobacteria
Chls-0523S-O-Chls-0523-a-A-1816S rRNAChlamydiales
CIV/V134216S rRNAheterocystous strains of cyanobacteria (sections IV and V)
cl81-64416S rRNAFew Desulfobacteraceae
Clept1240S-G-Clept-1240-a-A-1816S rRNAClostridium leptum
CREN499S-K-Cren-0499-a-A-1816S rRNAmost Crenarchaeota
CYA36116S rRNAmost Cyanobacteria
CYA66416S rRNAmost Cyanobacteria
CYA76216S rRNAmost Cyanobacteria
D-acet1027r (DFACE1028)S-S-Df.ace-1028-a-A-1816S rRNADesulfotomaculum acetoxidans
660(DBB660)S-G-Dsbb-0660-a-A-2016S rRNAsome Desulfobulbus
221(DBM221)S-G-Dsbm-0221-a-A-2016S rRNADesulfobacterium vacuolatum, D. niacini, D. autotrophicum
DCC209S-S-Dcc.mv-0209-a-A-1816S rRNADesulfococcus multivorans
DCC868S-*-Dsb-0868-a-A-1816S rRNADesulfosarcina sp., Desulfonema spp., Desulfococcus sp., Desulfobacterium spp., Desulfobotulus sp., Desulfostipes sp., Desulfomusa sp.
DDK316S rRNATreponema sp. DDKL-3
DDK416S rRNATreponema phagedenis, DDKL-4
DEM1164r16S rRNADesulfotomaculum cluster I and other Firmicutes
DEM-RC1015r16S rRNADesulfotomaculum clone sequences from rice paddy soil
Dsb220(desulfobacter)S-G-Dsb-0220-a-A-2016S rRNAmost Desulfobacter
DFM22816S rRNADesulfotomaculum spp.
DNMA65716S rRNAsome Desulfonema
DRM43216S rRNADesulfuromonas spp., Pelobacter spp.
129(DSB129)S-G-Dsb-0129-a-A-1816S rRNAmost Desulfobacter
DSB62316S rRNADesulfobacter spp.
DSB98516S rRNADesulfobacter, Desulfobacula, Desulfospira, and Desulfotignum
DSBAC35516S rRNAmost Desulfobacterales and Syntrophobacterales
DSBO22416S rRNADesulfobotulus sapovorans, Desulfovibrio fairfieldensis, and other Deltaproteobacteria
DSC193S-*-Dsb-0193-a-A-1816S rRNADesulfosarcina variabilis
DSD131 (DSVAE131)S-S-Dsv.ae-0131-a-A-1816S rRNADesulfovibrio aestuarii
DSF67216S rRNADesulfofrigus, Desulfofaba gelida, Desulfomusa hansenii
DSMA48816S rRNADesulfarculus baarsii, Desulfomonile tiedjei, and Syntrophus
DSR651S-*-Dsb-0651-a-A-1816S rRNASome Desulfobulbaceae
DSS22516S rRNADesulfosarcina and many other Desulfobacteraceae
DSS658S-*-Dsb-0658-a-A-1816S rRNADesulfobacteraceae and other Bacteria
DSV115416S rRNADesulfovibrio alcoholivorans, D. fructosivorans, D. burkinensis, rice field isolate F1-7b and R-SucA1
DSV1292S-*-Dsv-1292-a-A-1816S rRNASome Desulfovibrio and Bilophila wadsworthia
DSV21416S rRNAMost Desulfomicrobium
DSV40716S rRNAFew Desulfovibrionaceae, Desulfohalobiaceae, and Desulfonatronumaceae
Dsv683S-*-Dsv-0683-a-A-2216S rRNADesulfovibrionaceae, metal reducers
687(DSV687)S-F-Dsv-0687-a-A-1616S rRNAMost Desulfovibrionales (excluding Lawsonia) and many Desulfuromonales
DSV69816S rRNASome Desulfovibrio, Bilophila wadsworthia, and Lawsonia intracellularis
Dtm(a)229S-*-Dtm(a)-0229-a-A-1816S rRNADesulfotomaculum cluster Ia
Dtm(bcd)230S-*-Dtm(bcd)-0230-a-A-1816S rRNAMany Desulfotomaculum cluster I and other Firmicutes
Dtm(be)152S-*-Dtm(be)-0152-a-A-2016S rRNADesulfotomaculum cluster Ib and Ie
Dtm(c)428S-*-Dtm(c)-0428-a-A-1916S rRNADesulfotomaculum cluster Ic
Dtm(cd)216S-*-Dtm(cd)-0216-a-A-1916S rRNADesulfotomaculum cluster Ic and Id
Dtm229S-G-Dtm-0229-a-A-1816S rRNADesulfotomaculum cluster I and other Firmicutes
Eampr1823S rRNAEnterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus
Eamprs0923S rRNAEnterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus, E. sulfureus
Eas0923S rRNAEnterococcus asini
Eav58i23S rRNAEnterococcus avium
Eca18i16S rRNAEnterococcus casseliflavus
Ecafl09i23S rRNAEnterococcus casseliflavus, E. flavescens
ECC460 (ECC 461)16S rRNAEnterococcus columbae, Enterococcus cecorum
Ecc46116S rRNAEnterococcus columbae, E. cecorum
Eacdfg5723S rRNAEnterococcus casseliflavus, E. flavescens, E. asini, E. dispar, E. gallinarum
Ece0923S rRNAEnterococcus cecorum
ECE83 (6B)16S rRNAEnterococcus cecorum
ECE91 (ECE 92)16S rRNAEnterococcus cecorum
Ece9216S rRNAEnterococcus cecorum
Ecf45916S rRNAEnterococcus casseliflavus, E. flavescens, E. dispar, E. pseudoavium
Ecg19116S rRNAEnterococcus casseliflavus, E. flavescens
ECG192 (ECG 191)16S rRNAEnterococcus gallinarum, Enterococcus flavescens, Enterococcus casseliflavus
Eco09i23S rRNAEnterococcus columbae
ECO1167 (ECO 45A)23S rRNAEscherichia coli
Ecoce5823S rRNAEnterococcus cecorum, E. columbae
Edfm5723S rRNAEnterococcus durans, E. faecium, E. mundtii
EDI130 (EDI 131)16S rRNAEnterococcus dispar
Edi13116S rRNAEnterococcus asini
Edi13716S rRNAEnterococcus dispar
Edi3823S rRNAEnterococcus dispar
Edu5816S rRNAEnterococcus durans
Eduhi0923S rRNAEnterococcus durans, E. hirae
Efa5423S rRNAEnterococcus faecalis
Efi5816S rRNAEnterococcus faecium
Efl58i23S rRNAEnterococcus flavescens
Efs12916S rRNAEnterococcus faecalis
Ega0923S rRNAEnterococcus gallinarum
Ema5816S rRNAEnterococcus malodorans
Emu5823S rRNAEnterococcus mundtii
EMU8716S rRNAEnterococcus mundtii
ENC124916S rRNAEnterococcus saccharolyticus, E.dispar, E.casseliflavus, E.faecium, E.flavescens, E.gallinarum, E.columbae, E.sulfureus
ENC1249-Comp16S rRNAEnterococcus malodoratus, E.avium, E.pseudoavium, E.raffinosus, E.durans, E.mundtii, Lb.brevis, Cb.brevisimilis, Cb.divergens
Enc125916S rRNAEnterococcus spp.
Enc13116S rRNAEnterococcus spp.
Enc14516S rRNAEnterococcus spp.
Enc38i23S rRNAEnterococcus spp., Melisococcus spp., Tetragenococcus spp., Vagococcus spp.
ENC90 (ENC 91)16S rRNAEnterococcus faecium, E.mundtii, E.hirae
Enc9316S rRNAEnterococcus hirae, E. faecium
Eps5816S rRNAEnterococcus pseudoavium
Era5823S rRNAEnterococcus raffinosus
Esa0923S rRNAEnterococcus saccharolyticus
Esa3823S rRNAEnterococcus asini, E. saccharolyticus
Esa45216S rRNAEnterococcus saccharolyticus
ESA88 (ESA 89)16S rRNAEnterococcus saccharolyticus
Esasu5823S rRNAEnterococcus sulfureus, E. saccharolyticus
Eso18i23S rRNAEnterococcus solitarius
Eso19316S rRNAEnterococcus solitarius
Eso5823S rRNAEnterococcus solitarius
Esoha5723S rRNAEnterococcus solitarius, Tetragenococcus halophilus
Esu1823S rRNAEnterococcus sulfureus
Esu9016S rRNAEnterococcus sulfureus
EUB338 (Bact338) (bacterial)S-D-Bact-0338-a-A-1816S rRNAmost Bacteria
EUB338 II (SBACT P 338)S-*-BactP-0338-a-A-1816S rRNAPlanctomycetales
EUB338 III (SBACT V 338)S-*-BactV-0338-a-A-1816S rRNAVerrucomicrobiales
EUK51618S rRNAEukarya
EURY498S-K-Eury-0498-a-A-1416S rRNAmost Euryarchaeota
FFE8b16S rRNAFlavobacterium ferrugineum
gam1-124616S rRNA“Candidatus Gilliamella apicola” or Gamma-1 (symbiotic Gammaproteobacteria phylotype in honey bee)
FibroS-G-Fibr-0153-a-S-1616S rRNAFibrobacter
G.am1-439S-*-G.am1-0439-a-A-1916S rRNAGordona amarae group 1 strains
G.am205S-S-G.am-0205-a-A-1916S rRNAGordona amarae
G.am2-439S-*-G.am2-0439-a-A-1916S rRNAGordona amarae group 2 strains
G123TS-G-Thioth-697-a-A-1816S rRNAThiothrix eikelboomii, T. nivea, T. unzii, T. fructosivorans, T. defluvii, Eikelboom type 021N group I, II, III
G1BS-*-021Ng1-1029-a-A-1816S rRNAEikelboom type 021N group I
G2MS-*-021Ng2-842-a-A-1816S rRNAEikelboom type 021N group II
G3MS-*-021Ng3-996-a-A-1816S rRNAEikelboom type 021N group III
GAM42aL-C-gProt-1027-a-A-1723S rRNAGammaproteobacteria
GI-554S-O-Cenar-0554-a-A-2016S rRNAcrenarchaeal group I marine Archaea
GII-554S-O-ArgII-0554-a-A-2016S rRNAeuryarchaeal group II marine Archaea
Gm633S-G-gMtr-0633-a-A-2016S rRNAMethylobacter, Methylomicrobium
Gm705S-F-gMtr-0705-a-A-1816S rRNAg-Methanotrophs except Methylocaldum
Goam192S-S-G.am-0192-a-A-1816S rRNAGordona amarae
H7-1014S-*-H7-1014-a-A-1816S rRNAactivated sludge clone H7
HGC69A (HGC)L-P-Grps-1901-a-A-1823S rRNAActinobacteria (high G+C Gram-positive bacteria)
HoAc1402S-*-HoAc-1402-a-A-1816S rRNAAcidobacteria, activated sludge clones A22, A34, H3, H44, S6
Hvu103416S rRNAHyphomicrobium vulgare
HYD20816S rRNAHydrogenophaga spp.
HYD56B23S rRNAHydrogenophaga spp.
Hydr540S-O-Hydr-0540-a-A-1916S rRNAAquificales
intestinalis 116S rRNAFibrobacter intestinalis
intestinalis 216S rRNAFibrobacter intestinalis
IRog116S rRNAphylum Acidobacteria group a
IRog216S rRNAphylum Acidobacteria group a
LEG22616S rRNALegionellaceae
LEG70516S rRNALegionella
LEGPNE116S rRNALegionella pneumophila
LGC354A16S rRNAFirmicutes (Gram-positive bacteria with low G+C content)
LGC354B16S rRNAFirmicutes (Gram-positive bacteria with low G+C content)
LGC354C16S rRNAFirmicutes (Gram-positive bacteria with low G+C content)
LM3S-G-Bif-1412-a-A-2116S rRNABifidobacterium genus
MB116S rRNAMethanosarcina frisius, Methanosarcina sp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri
MB117416S rRNAMethanobacterium spp., Methanobrevibacter spp., Methanosphaera spp.
MB316S rRNAMethanosarcina frisius, Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri
MB31016S rRNAMethanobacterium spp., Methanobrevibacter spp., Methanosphaera spp.
MB416S rRNAMethanosarcina thermophila, Methanosarcina barkeri
MC110916S rRNAMethanococcus spp.
Mcd77S-G-gMcd-0077-a-A-2116S rRNAMethylocaldum spp.
Mcell-102616S rRNAMethylocella palustris
Mcell-181(AcidM-181)16S rRNAMethylocella palustris+Methylocapsa acidiphila
MG120016S rRNAMethanomicrobium spp., Methanogenium spp., Methanoculleus spp., Methanospirillum spp., Methanocorpusculum spp., Methanoplanus spp.
MG316S rRNAall methanogens, Halobacterium spp., Pyrococcus spp., Sulfolobus spp., Homo sapiens, Thermofilum spp., Pyrobaculum spp.
MICR#116S rRNAMicrocystis spp.
MICR#216S rRNAMicrocystis aeruginosa NIVA-CYA 143, 57, 228/1, 43, 123/1, 31, 166, M. cf. ichthyoblabe, NIVA-CYA 279, M. cf. wesenbergii NIVA-CYA 172/5, M. viridis NIVA-CYA 122/2
MICR#316S rRNAMicrocystis spp.
Mlb482S-G-gMlb-0482-a-A-2316S rRNAMethylobacter spp.
Mlb662S-G-gMlb-0662-a-A-2216S rRNAMethylobacter spp.
Mlc123S-G-gMlc-0123-a-A-2216S rRNAMethylococcus spp.
Mlc1436S-G-gMlc-1436-a-A-2416S rRNAMethylococcus spp.
Mlm482S-G-gMlm-0482-a-A-2316S rRNAMethylomonas spp.
Mlm732aS-G-gMlm-0732-a-A-1916S rRNAMethylomonas group A
Mlm732bS-G-gMlm-0732-b-A-1916S rRNAMethylomonas group C
Mmb1007S-G-gMmb-1007-a-A-2016S rRNAMethylomicrobium
Mmb482S-G-gMmb-0482-a-A-2316S rRNAMethylomicrobium
Mplu46416S rRNAMelissococcus pluton
MS116S rRNAMethanothrix soehngenii, Methanosaeta concilii
MS141416S rRNAMethanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp.
MS216S rRNAMethanothrix soehngenii, Methanosaeta concilii
MS516S rRNAMethanothrix soehngenii, Methanosaeta concilii, Methanothrix sp. strain CALS-1, Methanothrix sp. strain PTT, Methanosaeta thermoacetophila
MS821S-G-Msar-0821-a-A-2416S rRNAMethanosarcina frisius, Methanosarcina spp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri, Methanoholophilus mahii, Methanophilus sp.
MSMX86016S rRNAMethanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp., Methanosaeta spp.
MX82516S rRNAMethanosaeta spp.
Myb736aS-*-Myb-0736-a-A-2216S rRNAMycobacterium complex
Myb736bS-*-Myb-0736-b-A-2216S rRNAMycobacterium complex
NAL120816S rRNANevskia clones NO2 and NO11, Mycoplana bullata, Brevundimonas diminuta
NAL65716S rRNANevskia clones NO2 and NO11
NB1000S-G-Nbac-1000-a-A-1516S rRNANitrobacter spp.
NEV17716S rRNANevskia ramosa
NEV65616S rRNANevskia ramosa
NIT3S-G-Nbac-1035-a-A-1816S rRNANitrobacter spp.
NmV (Ncmob)S-S-Nmob-0174-a-A-1816S rRNANitrosococcus mobilis (Nitrosomonas) lineage
NONEUB (NON338) (non-Bact338)16S rRNAcontrol probe complementary to EUB338
NOSTOC16S rRNAgenera Nostoc, Aphanizomenon, and Anabaena
Nscoc128S-*-Nscoc-128-a-A-1816S rRNANitrosococcus oceani, N. halophilus (Gammaproteobacteria)
Nse1472S-*-Nse-1472-a-A-1816S rRNANitrosomonas europea, N. halophila, N. eutropha, Kraftisried-Isolat Nm103
Nsm156S-G-Nsm-0155-a-A-1916S rRNANitrosomonas spp., Nitrosococcus mobilis
Nso1225S-F-bAOB-1224-a-A-2016S rRNABetaproteobacterial ammonia-oxidizing bacteria
Nso190S-F-bAOB-0189-a-A-1916S rRNABetaproteobacterial ammonia-oxidizing bacteria
Nsv44316S rRNANitrosospira spp.
Ntcoc84S-*-Ntcoc-84-a-A-1816S rRNANitrococcus mobilis
Ntspa1026S-*-Ntspa-1026-a-A-1816S rRNANitrospira moscoviensis, activated sludge clones A4 and A11
Ntspa662S-G-Ntspa-662-a-A-1816S rRNAgenus Nitrospira
Ntspa712S-*-Ntspa-712-a-A-2116S rRNAmost members of the phylum Nitrospirae
Ntspn693S-*-Ntspn-693-a-A-2016S rRNANitrospina gracilis
OTU1-1415S-*-OTU1-1415-a-A-2016S rRNAZoogloea ramigera, activated sludge clones A16, H7, H10, H11, H13, H22, H27. H40, S21
OTU14-129S-*-OTU14-0129-a-A-2016S rRNAHyphomicrobium spp., activated sludge clones A7b, A39
OTU16-1027S-*-OTU16-1027-a-A-1816S rRNAactivated sludge clones H4, H6, H29, S7
OTU16-1350S-*-OTU16-1350-a-A-1816S rRNAactivated sludge clones H4, H6, H29, S7
OTU17-66S-*-OTU17-0066-a-A-2016S rRNAactivated sludge clones H46, S43
OTU2-132 (ATDe132)S-*-ATDe-0132-a-A-1816S rRNAActivated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage
OTU2-467S-*-OTU2-0467-a-A-2016S rRNAactivated sludge clones A33, H25, H30, H35, S3, S10, S23
OTU25to31-1406S-*-OTU25to31-1406-a-A-1816S rRNAsome Anaerolineae
OTU26-650S-*-OTU26-0650-a-A-1816S rRNAactivated sludge clones A11b, A30, H1, H19
OTU28-1346S-*-OTU28-1346-a-A-1816S rRNAactivated sludge clones H39, S41
STEBA1426S-*-Steba-1426-a-A-1816S rRNASome members of the Sterolibacterium lineage
OTU31-656S-*-OTU31-0656-a-A-1816S rRNAactivated sludge clones H8, S9
OTU32-208S-*-OTU32-0208-a-A-1816S rRNAactivated sludge clones A31, S47
OTU32-630S-*-OTU32-0630-a-A-1816S rRNAactivated sludge clones A31, S47
OTU3-445S-*-OTU3-0445-a-A-2016S rRNAactivated sludge clones A13, H12, H20, H23, S28, S40
OTU43/44-360S-*-OTU43/44-0360-a-A-1816S rRNAAcidobacteria group a, activated sludge clones A22, A34, H3
OTU45-720S-*-OTU45-0720-a-A-2016S rRNAactivated sludge clones H44 and S6, soil clone C105, soil clone 11-25, Antarctic lake ice clone LB3-30
OTU4-645S-*-OTU4-0645-a-A-1816S rRNAAlcaligenes latus, activated sludge clones A2, A26b
OTU6-178S-*-OTU6-0178-a-A-1816S rRNABrachymonas denitrificans, activated sludge clone A6b
PAR1244S-G-Parc-1244-a-A-1916S rRNAgenus Paracoccus
PAR1457S-G-Parc-1457-a-A-1816S rRNAgenus Paracoccus
PAR651S-G-Parc-0651-a-A-1816S rRNAgenus Paracoccus
Pdv103116S rRNAParacoccus denitrificans, P. versutus
Pdv19816S rRNAParacoccus denitrificans, P. versutus
PHORM16S rRNAPhormidium spp
PLA46S-P-Planc-0046-a-A-1816S rRNAPlanctomycetales
PLA886S-P-Planc-0886-a-A-1916S rRNAPlanctomycetes
PLAN#116S rRNAPlanktothrix
PLAN#216S rRNAPlanktothrix
Ppu56a23S rRNAPseudomonas putida, P. mendocina
PS-116S rRNALeptothrix spp., Sphaerotilus natans ATCC 29329
PS56a23S rRNAmost true Pseudomonas spp.
Ps-Ag123S rRNAPseudomonas fluorescens Ag1
PSP-616S rRNALeptothrix discophora SP-6, L. cholodnii CCM1827, Leptothrix sp. strain NC-1
S.bry181S-S-S.bry-0181-a-A-2116S rRNASyntrophomonas bryantii
S.sap181S-S-S.sap-0181-a-A-2016S rRNASyntrophomonas sapovorans
S.wol180S-S-S.wol-0180-a-A-2116S rRNASyntrophomonas wolfei subsp. wolfei, S. wolfei strain LYB
SARCI551S-G-Sarci-0551-a-A-2016S rRNAgenus Methanosarcina
SARCI645S-G-Sarci-0645-a-A-1916S rRNAgenus Methanosarcina
SRB385 (SRB)S-*-Srb-0385-a-A-1816S rRNAMost Desulfovibrionales and other Bacteria
SRB385Db16S rRNADesulfobacterales, Desulfuromonales, Syntrophobacterales, Myxococcales, and other Bacteria
ssp. succinogenes16S rRNAFibrobacter succinogenes subsp. succinogenes (Bacteroides succinogenes S85 and A3c)
SSU102916S rRNAStreptococcus suis
SUBU123716S rRNABurkholderia spp., Sutterella spp.
succinogenes16S rRNAFibrobacter succinogenes
Sval42816S rRNASome Desulfobulbaceae (excluding most Desulfobulbus
SYN83516S rRNASyntrophobacter, Desulforhabdus
Synm126S-G-Synm-0126-a-A-1916S rRNASyntrophomonas sapovorans, S. wolfei subsp. wolfei, S. wolfei strain LYB
Synm700S-F-Synm-0700-a-A-2316S rRNAmesophilic members of the family Syntrophomonadaceae
Tbcil832S-*-Tbcil-0832-a-A-1816S rRNAthermophilic Bacillus spp.
TDEN16S rRNATreponema denticola
Tha0923S rRNATetragenococcus halophilus
Thio820S-S-Thio-0820-a-A-2216S rRNAThiobacillus thiooxidans, T. ferrooxidans
Thus438S-G-Thus-0438-a-A-1816S rRNAThermus spp.
TMAL16S rRNATreponema maltophilum
TPEC16S rRNATreponema pectinovorum
TRE I16S rRNAoral Treponema spp. group I
TRE II16S rRNAoral Treponema spp. group II
TRE III16S rRNAoral Treponema spp. group III
TRE IV16S rRNAoral Treponema spp. group IV
TRE V16S rRNAoral Treponema spp. group V
TRE VI16S rRNAoral Treponema spp. group VI
TRE VII16S rRNAoral Treponema spp. group VII
TSOC16S rRNATreponema socranskii
Ttoga660S-*-Ttoga-0660-a-A-1816S rRNAThermotogales
TVIN16S rRNATreponema vincentii
UNIV1390S-*-Univ-1390-a-A-1816S rRNAall Organisms
UNIVER16S rRNAall Bacteria
XAN81816S rRNAXanthomonas branch
ZAL16S rRNAZoogloea ramigera ATCC 19623
ZBE16S rRNAZoogloea ramigera ATCC 25935
ZRA23a (ZRA,ZOGLO647)S-*-Zoglo-0647-a-A-1816S rRNAMost members of the Zoogloea lineage, not Z. resiniphila
CC23a16S rRNACaedibacter caryophilus (C. caryophyla) and other Caedibacter-related endosymbionts of Acanthamoeba spp.
PcaeC9S-S-PcaeC9-217-a-A-1816S rRNACandidatus Paracaedibacter acanthamoebae (endosymbiont of Acanthamoeba sp. UWC9)
PcaeE39S-S-PcaeE339-217-a-A-1816S rRNACandidatus Paracaedibacter symbiosus (endosymbiont of Acanthamoeba sp. UWE39)
CaeAc998S-S-CaeAc-998-a-A-1816S rRNACandidatus Caedibacter acanthamoebae (endosymbiont of Acanthamoeba polyphaga HN-3)
Mg70516S rRNAtype I methanotrophs
Mg8416S rRNAtype I methanotrophs
Ma45016S rRNAtype II methanotrophs (Methylosinus/Methylocystis spp.)
Ma46416S rRNAtype II methanotrophs
Mg66916S rRNAMethylobacter spp., Methylomonas spp.
Mg100416S rRNAMethylomicrobium
Mg98316S rRNAtype I methanotrophs
Mg99316S rRNAtype I methanotrophs
Stemal16S rRNAStenotrophomonas maltophilia
Burcep16S rRNABurkholderia cepacia
Burkho16S rRNABurkholderia spp.
Haeinf16S rRNAHaemophilus influenzae
Sau16S rRNAStaphylococcus aureus
Spn16S rRNAStreptococcus pneumoniae
Ent16S rRNAEnterobacteriaceae except Proteus spp.
Kpn23S rRNAKlebsiella pneumoniae
Caal18S rRNACandida albicans
Cagl18S rRNACandida (Torulopsis) glabrata
Ckrus18S rRNACandida krusei
Cpara651 (Cpara)18S rRNACandida parapsilosis
PF218S rRNAall yeasts
Str16S rRNAStreptococcus spp.
Spy16S rRNAStreptococcus pyogenes
Saga16S rRNAStreptococcus agalactiae
Hpy-116S rRNAHelicobacter pylori
ClaR123S rRNAclarithromycin resistant Helicobacter pylori
ClaR223S rRNAclarithromycin resistant Helicobacter pylori
ClaR323S rRNAclarithromycin resistant Helicobacter pylori
ClaWT23S rRNAHelicobacter pylori (clarithromycin sensitve)
ATE23S rRNAAureobacterium testaceum
BKE23S rRNABrevibacterium sp. (B. ketoglutamicum)
CGL23S rRNACorynebacterium glutamicum
Pst6716S rRNAPseudomonas stutzeri, P. mendocina
Pst99716S rRNAPseudomonas stutzeri
Pae99716S rRNAPseudomonas spp.
ACI20816S rRNAAcidovorax spp.
COM142416S rRNAComamonas spp.
Ps23S rRNAPseudomonas spp.
Ppu23S rRNAPseudomonas spp.
Pce23S rRNABurkholderia spp.
Pdi16S rRNABrevundimonas (Pseudomonas) diminuta, Caulobacter spp., Mycoplana bullata
Cte16S rRNAComamonas spp., Acidovorax spp., Hydrogenophaga spp., Aquaspirillum spp.
PPC16S rRNABurkholderia spp., Sutterella wadsworthia
PSM G16S rRNAPseudomonas spp.
PPT16S rRNAComamonas spp., Acidovorax spp., Hydrogenophaga spp., Aquaspirillum spp.
NEUS-*-Nsm-0651-a-A-1816S rRNAMost halophilic and halotolerant Nitrosomonas spp.
PseaerA16S rRNAPseudomonas aeruginosa
PseaerA23S rRNAPseudomonas aeruginosa
1016S rRNABacillus medusa, B. thuringiensis
1116S rRNABacillus medusa, B. thuringiensis
1216S rRNABacillus medusa, B. thuringiensis
1316S rRNABacillus medusa, B. thuringiensis
1416S rRNABacillus mycoides
1516S rRNABacillus mycoides
1616S rRNABacillus mycoides
1716S rRNABacillus mycoides
1816S rRNABacillus anthracis, B. cereus
1916S rRNABacillus anthracis, B. cereus
2016S rRNABacillus anthracis, B. cereus
2116S rRNAAnthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis
2216S rRNAAnthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis
2316S rRNAAnthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis
2416S rRNABacillus subtilis
2516S rRNABacillus subtilis
2616S rRNABacillus subtilis
2716S rRNABacillus subtilis
2816S rRNASubtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis
2916S rRNASubtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis
3016S rRNASubtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis
Amx1900L-*-Amx-1900-a-A-2123S rRNAanaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos
Kst157S-S-Kst-0157-a-A-1816S rRNACandidatus Kuenenia stuttgartiensis
Ban162 (B. anam.)S-S-Ban-0162(B. anam.)-a-A-1816S rRNACandidatus Brocadia anammoxidans
Amx820S-*-Amx-0820-a-A-2216S rRNAanaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos
VaV316S rRNAVibrio anguillarum
Syb701S-*-MUG28-0701-a-A-2016S rRNAclone MUG28
GNSB633S-*-GNSB-0633-a-A-2016S rRNAgreen nonsulfur clones MUG9, TUG8, TUG9, TUG10
RAL19616S rRNARuminococcus albus
RFL19616S rRNARuminococcus flavefaciens FD-1
RAL117616S rRNARuminococcus albus
RFL117616S rRNARuminococcus flavefaciens
RAL126916S rRNARuminococcus albus
RFL126916S rRNARuminococcus flavefaciens
DHP 100616S rRNASynergistes jonesii
DHP 101716S rRNASynergistes jonesii
PAD16S rRNABifidobacterium adolescentis
PBI16S rRNABifidobacterium bifidum
PBR16S rRNABifidobacterium breve
PIN16S rRNABifidobacterium infantis
PLO16S rRNABifidobacterium longum
SPN316S rRNAShewanella putrefaciens
V3VV16S rRNAVibrio vulnificus
UNIV1389aS-D-Univ-1389-a-A-1816S rRNABacteria, not Epsilonproteobacteria
UNIV1389bS-D-Univ-1389-b-A-1818S rRNAEucarya
UNIV1389cS-D-Univ-1389-c-A-1816S rRNAArchaea
ARCH917S-D-Arch-0917-a-A-1816S rRNAArchaea
DELTA495aS-C-dProt-0495-a-A-1816S rRNAMost Deltaproteobacteria and most Gemmatimonadetes
DELTA495bS-*-dProt-0495-b-A-1816S rRNAsome Deltaproteobacteria
DELTA495cS-*-dProt-0495-c-A-1816S rRNAsome Deltaproteobacteria
NTSPA714S-*-Ntspa-714-a-A-1816S rRNAPhylum Nitrospira, not Thermodesulfovibrio islandicus
DSB706S-*-Dsb-0706-a-A-1816S rRNAMost Desulfobulbaceae and Thermodesulforhabdus
DSB230S-*-Dsb-0230-a-A-1816S rRNADesulfotalea-Desulforhopalus-Desulfocapsa-Desulfofustis lineage
DSTAL131S-G-Dstal-0131-a-A-1816S rRNADesulfotalea spp.
DSTAL213S-G-Dstal-0213-a-A-1816S rRNADesulfotalea spp.
DSTAL645S-G-Dstal-0645-a-A-1816S rRNADesulfotalea spp.
DSTAL732S-G-Dstal-0732-a-A-1816S rRNADesulfotalea spp.
DSTAL835S-G-Dstal-0835-a-A-1816S rRNADesulfotalea spp.
DSRHP185S-*-Dsrhp-0185-a-A-1816S rRNADesulforhopalus spp.
DSBB228S-G-Dsbb-0228-a-A-1816S rRNADesulfobulbus spp.
DSBB660S-G-Dsbb-0660-a-A-1816S rRNADesulfobulbus spp.
DSB986S-*-Dsb-0986-a-A-1816S rRNADesulfobacter spp., Desulfobacula sp., Desulfobacterium sp., Desulfospira sp., Desulfotignum sp.
DSB1030S-*-Dsb-1030-a-A-1816S rRNADesulfobacter spp., Desulfobacula sp., Desulfobacterium sp., Desulfospira sp., Desulfotignum sp.
DSB1240S-*-Dsb-1240-a-A-1816S rRNADesulfobacter spp., Desulfotignum sp.
DSB623aS-*-Dsb-0623-a-A-1816S rRNADesulfobacter curvatus, Dsb. halotolerans, Dsb. hydrogenophilus, Dsb. postgatei, Dsb. Vibrioformis
DSB623bS-*-Dsb-0623-b-A-1816S rRNADesulfobacter sp. BG8, Dsb. sp. BG23
DSBLA623S-S-Dsb.la-0623-a-A-1816S rRNADesulfobacter latus
DSBACL143S-G-Dsbacl-0143-a-A-1816S rRNADesulfobacula spp.
DSBACL225S-G-Dsbacl-0225-a-A-1816S rRNADesulfobacula spp.
DSBACL317S-G-Dsbacl-0317-a-A-1816S rRNADesulfobacula spp.
DSBACL1268S-G-Dsbacl-1268-a-A-1816S rRNADesulfobacula spp.
DSBACL1434S-G-Dsbacl-1434-a-A-1816S rRNADesulfobacula spp.
DSB674S-*-Dsb-0674-a-A-1816S rRNADesulfofrigus spp., Desulfofaba gelida, Desulfomusa hansenii
DSB220S-*-Dsb-0220-a-A-1816S rRNADesulfobacterium niacini, Dsbm. vacuolatum, Dsbm. autotrophicum, Desulfofaba gelida
DSBM1239S-*-Dsbm-1239-a-A-1816S rRNADesulfobacterium niacini, Dsbm. vacuolatum, Dsbm. autotrophicum
DSFRG211S-G-Dsfrg-0211-a-A-1816S rRNADesulfofrigus spp.
DSFRG445S-G-Dsfrg-0445-a-A-1816S rRNADesulfofrigus spp.
DSFRG1030S-G-Dsfrg-1030-a-A-1816S rRNADesulfofrigus spp.
DSSDBM194S-*-DssDbm-0194-a-A-1816S rRNADesulfosarcina variabilis, Desulfobacterium cetonicum
DSSDBM217S-*-DssDbm-0217-a-A-1816S rRNADesulfosarcina variabilis, Desulfobacterium cetonicum
DSSDBM998S-*-DssDbm-0998-a-A-1816S rRNADesulfosarcina variabilis, Desulfobacterium cetonicum
DSSDBM1286S-*-DssDbm-1286-a-A-1816S rRNADesulfosarcina variabilis, Desulfobacterium cetonicum
DSBMIN218S-S-Dsbm.in-0218-a-A-1816S rRNADesulfobacterium indolicum
DSNISH179S-S-Dsn.ish-0179-a-A-1816S rRNADesulfonema ishimotonii
DSNISH442S-S-Dsn.ish-0442-a-A-1816S rRNADesulfonema ishimotonii
DSNISH1001S-S-Dsn.ish-1001-a-A-1816S rRNADesulfonema ishimotonii
DSN658S-*-Dsn-0658-a-A-1816S rRNADesulfonema limicola, Dsn. magnum
DSBOSA445S-S-Dsbo.sa-0445-a-A-1816S rRNADesulfobotulus sapovorans
DSMON95S-*-Dsmon-0095-a-A-1816S rRNADesulfomonile spp.
DSMON1421S-*-Dsmon-1421-a-A-1816S rRNADesulfomonile spp.
SYBAC986S-*-Sybac-0986-a-A-1816S rRNADesulfovirga spp., Desulforhabdus spp., Syntrophobacter spp.
DSACI175S-G-Dsaci-0175-a-A-1816S rRNADesulfacinum spp.
DSACI207S-G-Dsaci-0207-a-A-1816S rRNADesulfacinum spp.
TDRNO448S-S-Tdr.no-0448-a-A-1816S rRNAThermodesulforhabdus norvegica
TDRNO1030S-S-Tdr.no-1030-a-A-1816S rRNAThermodesulforhabdus norvegica
TDRNO1443S-S-Tdr.no-1443-a-A-1816S rRNAThermodesulforhabdus norvegica
DSV686S-*-Dsv-0686-a-A-1816S rRNAMost Desulfovibrionales and Desulfuromonadales
DSV698S-*-Dsv-0698-a-A-1816S rRNADesulfovibrio caledoniensis, Dsv. dechloracetivorans, Dsv. profundus, Dsv. aespoeensis, Dsv. halophilus, Dsv. gracilis, Dsv. longus, Dsv. salexigens, Dsv. zosterae, Dsv. bastinii, Dsv. fairfieldensis, Dsv. intestinalis, Dsv. piger, Dsv. desulfuricans, Dsv
DVDAPC872S-*-Dv.d.a.p.c-0872-a-A-1816S rRNADesulfovibrio caledoniensis, Dsv. dechloracetivorans, Dsv. profundus, Dsv.aespoeensis
DVHO130S-*-Dv.h.o-0130-a-A-1816S rRNADesulfovibrio halophilus, Dsv. oxyclinae
DVHO733S-*-Dv.h.o-0733-a-A-1816S rRNADesulfovibrio halophilus, Dsv. oxyclinae
DVHO831S-*-Dv.h.o-0831-a-A-1816S rRNADesulfovibrio halophilus, Dsv. oxyclinae
DVHO1424S-*-Dv.h.o-1424-a-A-1816S rRNADesulfovibrio halophilus, Dsv. oxyclinae
DVAA1111S-*-Dv.a.a-1111-a-A-1816S rRNADesulfovibrio africanus, Dsv. aminophilus
DVGL199S-*-Dv.g.l-0199-a-A-1816S rRNADesulfovibrio gracilis, Dsv. longus
DVGL445S-*-Dv.g.l-0445-a-A-1816S rRNADesulfovibrio gracilis, Dsv. longus
DVGL1151S-*-Dv.g.l-1151-a-A-1816S rRNADesulfovibrio gracilis, Dsv. longus
DVGL1421S-*-Dv.g.l-1421-a-A-1816S rRNADesulfovibrio gracilis, Dsv. longus
DSV820S-*-Dsv-0820-a-A-1816S rRNADesulfovibrio salexigens, Dsv. zosterae, Dsv. fairfieldensis, Dsv. intestinalis, Dsv. piger, Dsv. desulfuricans
DVSZ849S-*-Dv.s.z-0849-a-A-1816S rRNADesulfovibrio salexigens, Dsv. zosterae
DVIG448S-*-Dv.i.g-0448-a-A-1816S rRNADesulfovibrio gabonensis, Dsv. indonesiensis
DVIG468S-*-Dv.i.g-0468-a-A-1816S rRNADesulfovibrio gabonensis, Dsv. indonesiensis
DSV651S-*-Dsv-0651-a-A-1816S rRNADesulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis, Dsv. inopinatus
DVFABS153S-*-Dv.f.a.b.s-0153-a-A-1816S rRNADesulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis
DVFABS653S-*-Dv.f.a.b.s-0653-a-A-1816S rRNADesulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis
DVFABS1351S-*-Dv.f.a.b.s-1351-a-A-1816S rRNADesulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis
DVLVT139S-*-Dv.l.v.t-0139-a-A-1816S rRNADesulfovibrio termitidis, Dsv. longreachensis, Dsv. vulgaris
DVLVT175S-*-Dv.l.v.t-0175-a-A-1816S rRNADesulfovibrio termitidis, Dsv. longreachensis, Dsv. vulgaris
DVLT131S-*-Dv.l.t-0131-a-A-1816S rRNADesulfovibrio termitidis, Dsv. longreachensis
DVLT986S-*-Dv.l.t-0986-a-A-1816S rRNADesulfovibrio termitidis, Dsv. longreachensis
DVLT1027S-*-Dv.l.t-1027-a-A-1816S rRNADesulfovibrio termitidis, Dsv. longreachensis
DSM194S-G-Dsm-0194-a-A-1816S rRNADesulfomicrobium spp., Desulfobacterium macestii
DSM213S-G-Dsm-0213-a-A-1816S rRNADesulfomicrobium
DSHRE830S-S-Dsh.re-0830-a-A-1816S rRNADesulfohalobium retbaense
DSHRE995S-S-Dsh.re-0995-a-A-1816S rRNADesulfohalobium retbaense
DSHRE1243S-S-Dsh.re-1243-a-A-1816S rRNADesulfohalobium retbaense
DFMI227aS-*-DfmI-0227-a-A-1816S rRNADesulfotomaculum putei, Dfm. gibsoniae, Dfm. geothermicum, Dfm. thermosapovorans, Dfm. thermoacidovorans, Dfm. thermobenzoicum, Dfm. thermoacetoxidans, Dfm. australicum, Dfm. kuznetsovii, Dfm. thermocisternum, Dfm. luciae, Sporotomaculum hydroxybenzoicum
DFMI227bS-*-DfmI-0227-b-A-1816S rRNADesulfotomaculum aeronauticum, Dfm. nigrificans, Dfm. reducens, Dfm. ruminis, Dfm. sapomandens, Dfm. halophilum
DFMI210S-*-DfmI-0210-a-A-1816S rRNAsome Desulfotomaculum spp. of clusters Ic and Id
DFMI229S-*-DfmI-0229-a-A-1816S rRNAsome Desulfotomaculum spp. of clusters Ib, Ic, and Id
DFMIa641S-*-DfmIa-0641-a-A-1816S rRNADesulfotomaculum spp. (cluster Ia)
DFMIb726S-*-DfmIb-0726-a-A-1816S rRNADesulfotomaculum spp., Sporotomaculum spp. (cluster Ib)
DFMIc841S-*-DfmIc-0841-a-A-1816S rRNADesulfotomaculum spp. (cluster Ic)
DFMIc1012S-*-DfmIc-1012-a-A-1816S rRNADesulfotomaculum spp. (cluster Ic)
DFMIc1119S-*-DfmIc-1119-a-A-1816S rRNADesulfotomaculum spp. (cluster Ic)
DFMIc1138S-*-DfmIc-1138-a-A-1816S rRNADesulfotomaculum spp. (cluster Ic)
DFMId436S-*-DfmId-0436-a-A-1816S rRNADesulfotomaculum spp. (cluster Id)
DFMId625S-*-DfmId-0625-a-A-1816S rRNADesulfotomaculum spp. (cluster Id)
DFMId996S-*-DfmId-0996-a-A-1816S rRNADesulfotomaculum spp. (cluster Id)
DFMId1117S-*-DfmId-1117-a-A-1816S rRNADesulfotomaculum spp. (cluster Id)
DFACE199S-S-Df.ace-0199-a-A-1816S rRNADesulfotomaculum spp. (cluster Ie)
DFACE438S-S-Df.ace-0438-a-A-1816S rRNADesulfotomaculum spp. (cluster Ie)
DFACE995S-S-Df.ace-0995-a-A-1816S rRNADesulfotomaculum spp. (cluster Ie)
DFACE1436S-S-Df.ace-1436-a-A-1816S rRNADesulfotomaculum spp. (cluster Ie)
DFMIf126S-*-DfmIf-0126-a-A-1816S rRNADesulfotomaculum spp. (cluster If)
DFMII1107S-*-DfmII-1107-a-A-1816S rRNADesulfosporosinus spp., Desulfotomaculum auripigmentum (cluster II)
DFMII1281S-*-DfmII-1281-a-A-1816S rRNADesulfosporosinus spp., Desulfotomaculum auripigmentum (cluster II)
TDSV601S-*-Tdsv-0601-a-A-1816S rRNAThermodesulfovibrio spp.
Tdsulfo848 (TDSV849)S-*-Tdsulfo-0848-a-A-18 (S-*-Tdsv-0849-a-A-18)16S rRNAMost Thermodesulfovibrio and some Magnetobacterium
TDSV1326S-*-Tdsv-1326-a-A-1816S rRNAThermodesulfovibrio spp.
TDSBM1282S-P-Tdsbm-1282-a-A-1816S rRNAThermodesulfobacterium spp., Geothermobacterium sp.
TDSBM353S-*-Tdsbm-0353-a-A-1816S rRNAThermodesulfobacterium spp.
TDSBM652S-*-Tdsbm-0652-a-A-1816S rRNAThermodesulfobacterium spp.
ARGLO37S-G-Arglo-0037-a-A-1816S rRNAArchaeoglobus spp.
ARGLO276S-G-Arglo-0276-a-A-1816S rRNAArchaeoglobus spp.
ARGLO576S-G-Arglo-0576-a-A-1816S rRNAArchaeoglobus spp.
ARGLO972S-G-Arglo-0972-a-A-1816S rRNAArchaeoglobus spp.
316S rRNAUniversal
616S rRNABacteria
716S rRNABacteria
816S rRNABacteria
916S rRNABacteria
Bact1492S-D-Bact-1492-b-A-1616S rRNAmost Bacteria
Bact1492S-D-Bact-1492-a-A-2116S rRNAmost Bacteria
116S rRNAUniversal
216S rRNAUniversal
516S rRNABacteria
Phasco74116S rRNAPhascolarctobacterium faecium, Acidaminococcus fermentans, Succiniclasticum ruminis
Veil22316S rRNAVeillonella dispar, Veillonella parvula, Veillonella atypica
Ehal146916S rRNAEubacterium hallii, Clostridium herbivorans, Clostridium polysaccharolyticum
Lach57116S rRNALachnospira multipara, Eubacterium eligens, Lachnospira pectinoschiza
Ecyl38716S rRNAEubacterium cylindroides, Clostridium innocuum, Eubacterium biforme, Eubacterium tortuosum, Eubacterium dolichum, Streptococcus pleomorphus
Rfla729S-*-Rfla-0729-a-A-1816S rRNARuminococcus albus, R. flavefaciens
Rbro730S-*-Rbro-0730-a-A-1816S rRNAClostridium sporosphaeroides, Ruminococcus bromii, Clostridium leptum
RHC175aS-*-RHC-0175-a-A-1816S rRNAMost members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages
RHC439S-*-RHC-0439-a-A-1816S rRNARhodocyclus spp., most member of the Candidatus Accumulibacter cluster, Azospira lineage
RHW456S-G-Rhw-0456-a-A-1816S rRNABio-P enrichment culture clone R1
RHW991S-G-Rhw-0991-a-A-1816S rRNABio-P enrichment culture clone R1
RHX456S-G-Rhx-0456-a-A-1716S rRNACandidatus Accumulibacter phosphatis (clone R6)
RHX991S-G-Rhx-0991-a-A-1816S rRNACandidatus Accumulibacter phosphatis (clone R6)
AVI16S rRNAEnterococcus avium
ASI16S rRNAEnterococcus asini
CEC16S rRNAEnterococcus cecorum
COL16S rRNAEnterococcus columbae
CGF16S rRNAEnterococcus casseliflavus, E. gallinarum, E. flavescens
DUR16S rRNAEnterococcus durans
DIS16S rRNAEnterococcus dispar
FMDUR16S rRNAEnterococcus faecium, E. durans
HIR16S rRNAEnterococcus hirae
MAL16S rRNAEnterococcus malodoratus
MUN16S rRNAEnterococcus mundtii
PSE16S rRNAEnterococcus pseudoavium
RAF16S rRNAEnterococcus raffinosus
SAC16S rRNAEnterococcus sacharolyticus
SOL16S rRNAEnterococcus solitarius
SUL16S rRNAEnterococcus sulfureus
84216S rRNABdellovibrio spp.
MG-6416S rRNAtype I methanotrophs including Methylomonas spp., Methylomicrobium spp., Methylobacter spp., Methylococcus
MA-62116S rRNAtype II methanotrophs including Methylocystis spp., Methylosinus spp.
MA-22116S rRNAtype II methanotrophs including Methylocystis spp., Methylosinus spp.
Mc102916S rRNAMethylococcus spp.
Mmb112116S rRNAMethylomicrobium album BG8, M. agile A30
Mb112516S rRNAMethylobacter capsulatus and M. bovis strains
Chlae-574S-F-Chlae-0574-a-A-1816S rRNAChlamydiaceae
Chla-0232S-G-Chla-0232-A-1816S rRNAChlamydia
Chlph-0583S-G-Chlph-0583-a-A-1816S rRNAChlamydophila
Ct-0623S-S-Ct-0623-a-A-1816S rRNAChlamydia trachomatis
Cpn-0214S-S-Cpn-0214-a-A-1816S rRNAChlamydophila pneumoniae
Cpn-0974S-S-Cpn-0974-a-A-1816S rRNAChlamydophila pneumoniae
Cps-1414S-S-Cps-1414-a-A-1816S rRNA“Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae
Cps-1353S-S-Cps-1353-a-A-1816S rRNA“Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae
Bn9-65816S rRNAsubgroup of the Parachlamydiaceae including Parachlamydia acanthamoebae (Hallaposs coccus), endosymbionts of Acanthamoebae sp. UWE25 and UWE1
ParaC-0658S-*-ParaC-0658-a-A-1816S rRNAsubgroup of the Parachlamydiaceae including Neochlamydia hartmannellae, endosymbiont of Acanthamoeba sp. UWC22
Ctaenio-998S-S-Ctaenio-998-a-A-1816S rRNACaedibacter taeniospiralis
TM730516S rRNAsubdivision 1 of candidate division TM7
TM790516S rRNAcandidate division TM7
TM752216S rRNAcandidate division TM7
TM756716S rRNAcandidate division TM7
CHL 1851S-F-t1851-0592-a-A-2016S rRNAfilamentous bacterium Eikelboom Type 1851
Al16S rRNAAzospirillum lipoferum
Ai16S rRNAAzospirillum irakense
Aba16S rRNAAzospirillum brasiliense, A. amazonense
Enterbact D16S rRNAsome members of the Enterobacteriaceae
Enterbact B16S rRNAsome members of the Enterobacteriaceae and Vibrionaceae
ALT141316S rRNAAlteromonas, Colwellia
G Rb16S rRNARhodobacter, Roseobacter
G V16S rRNAVibrio
NOR1-5616S rRNANOR1 lineage (Gammaproteobacteria)
NOR2-145316S rRNANOR2 cluster group A (Gammaproteobacteria)
OCE23216S rRNAOceanospirillum
PSA18416S rRNAPseudoalteromonas, Colwellia
SAR86-124916S rRNASAR 86 cluster
SPH12016S rRNASphingomonas
Hypho-1241S-G-Hypho-1241-a-A-1916S rRNAHyphomicrobium
HyphoC1-648S-S-HyphoC1-648-a-A-2016S rRNAHyphomicrobium vulgare, H. hollandicum, H. aestuarii, H. zavarzinii
HyphoCII-654S-S-HyphoCII-654-a-A-1816S rRNAHyphomicrobium denitrificans, H. methylovorum, H. facilis
Gam1019S-S-g-Prot-1019-a-A-1816S rRNAphosphate accumulating bacteria (Gammaproteobacteria)
Gam1278S-S-g-Prot-1278-a-A-2016S rRNAphosphate accumulating bacteria (Gammaproteobacteria)
PAO846S-S-Rhodo-0846-a-A-1816S rRNACandidatus Accumulibacter phosphatis
actino-1011S-S-HGC-1011-a-A-1916S rRNATetrasphaera japonica, enhanced biological phosphorus removal clone Ebpr19, Ebpr20 (Actinobacteria)
NSR82616S rRNANitrospira moscoviensis, freshwater Nitrospira spp.
NSR115616S rRNANitrospira moscoviensis, freshwater Nitrospira spp.
NSR44716S rRNANitrospira spp.
MNP116S rRNAnocardioform actinomycetes
MLP16S rRNAMycobacterium sp. SMKN23, Mycobacterium sp. SMKN22, (nocardioform actinomycetes)
DLP16S rRNAnocardioform actinomycete sp.
GLP116S rRNAGordona sp. SMKN27, Gordona sp. SMKN12, Gordona sp. SMKN17, Gordona sp. SMKN14, (nocardioform actinomycetes)
GLP216S rRNAGordona sp. SMKN29, Gordona sp. SMKN15, (nocardioform actinomycetes)
GLP316S rRNAnocardioform actinomycete sp.
E.bar1237S-S-E.bar-1237-a-A-1816S rRNAEubacterium barkeri
E.bif462S-S-E.bif-0462-a-A-1816S rRNAEubacterium biforme
E.con1122S-S-E.con-1122-a-A-2016S rRNAEubacterium contortum
E.cyl461S-St-E.cyl-0461-a-A-1816S rRNAEubacterium cylindroides
E.cyl466S-St-E.cyl-0466-a-A-18-16S rRNAEubacterium cylindroides
E.dol183S-S-E.dol-0183-a-A-1816S rRNAEubacterium dolichum
E.had579S-S-E.had-0579-a-A-2016S rRNAEubacterium hadrum (Anaerostipes hadrus)
E.len194S-S-E.len-0194-a-A-1816S rRNAEubacterium lentum
E.lim1433S-S-E.lim-1433-a-A-1816S rRNAEubacterium limosum E. callanderi
E.mon84S-S-E.mon-0084-a-A-1816S rRNAEubacterium moniliforme
E.ven66S-S-E.ven-0066-a-A-1816S rRNAEubacterium ventriosum
GSB-532S-F-GSB-532-a-A-1516S rRNAgreen sulfur bacteria, Chlorobiaceae
GSB-822S-F-GSB-822-a-A-1916S rRNAgreen sulfur bacteria, Chlorobiaceae
b-AO23316S rRNABetaproteobacterial ammonia-oxidizing bacteria
Nsp43616S rRNANitrosospira spp.
NspCL1_24916S rRNANitrosospira cluster 1
NspCL2_45816S rRNANitrosospira cluster 2
NspCL3_45416S rRNANitrosospira cluster 3
NspCL4_44616S rRNANitrosospira cluster 4
Nmo25416S rRNANitrosomonas
Nmo254a16S rRNANitrosomonas
NmoCL6a_20516S rRNANitrosomonas cluster 6a
NmoCL6b_37616S rRNANitrosomonas cluster 6b
NmoCL7_43916S rRNANitrosomonas cluster 7
BT-116S rRNABacteroides thetaiotaomicron ATCC 29148 GenBank no. (GI) 13537351
BT-216S rRNABacteroides thetaiotaomicron ATCC 29148 GenBank no. (GI) 13537351
BT-316S rRNABacteroides thetaiotaomicron ATCC 29148 GenBank no. (GI) 13537351
BV-116S rRNABacteroides vulgatus ATCC 8482 GenBank no. (GI) 173916
BV-216S rRNABacteroides vulgatus ATCC 8482 GenBank no. (GI) 173916
BV-316S rRNABacteroides vulgatus ATCC 8482 GenBank no. (GI) 173916
BF-116S rRNABacteroides fragilis ATCC 23745 GenBank no. (GI) 143964
BF-216S rRNABacteroides fragilis ATCC 23745 GenBank no. (GI) 143964
BF-316S rRNABacteroides fragilis ATCC 23745 GenBank no. (GI) 143964
BD-116S rRNABacteroides distasonis ATCC 8503 GenBank no. (GI) 173915
BD-216S rRNABacteroides distasonis ATCC 8503 GenBank no. (GI) 173915
BD-316S rRNABacteroides distasonis ATCC 8503 GenBank no. (GI) 173915
CC-116S rRNAClostridium clostridiiforme ATCC 29084 GenBank no. (GI) 174147
CC-216S rRNAClostridium clostridiiforme ATCC 29084 GenBank no. (GI) 174147
CC-316S rRNAClostridium clostridiiforme ATCC 29084 GenBank no. (GI) 174147
CL-116S rRNAClostridium leptum ATCC 29065 GenBank no. (GI) 12655400
CL-216S rRNAClostridium leptum ATCC 29065 GenBank no. (GI) 12655400
CL-316S rRNAClostridium leptum ATCC 29065 GenBank no. (GI) 12655400
FPR-116S rRNAFusobacterium prausnitzii ATCC 27768 GenBank no. (GI) 695518
FPR-216S rRNAFusobacterium prausnitzii ATCC 27768 GenBank no. (GI) 695518
FPR-316S rRNAFusobacterium prausnitzii ATCC 27768 GenBank no. (GI) 695518
PSP-116S rRNAPeptostreptococcus productus ATCC 27340 GenBank no. (GI) 3492809
PSP-216S rRNAPeptostreptococcus productus ATCC 27340 GenBank no. (GI) 3492809
PSP-316S rRNAPeptostreptococcus productus ATCC 27340 GenBank no. (GI) 3492809
ROB-116S rRNARuminococcus obeum ATCC 29174 GenBank no. (GI) 854420
ROB-216S rRNARuminococcus obeum ATCC 29174 GenBank no. (GI) 854420
ROB-316S rRNARuminococcus obeum ATCC 29174 GenBank no. (GI) 854420
RBR-116S rRNARuminococcus bromii ATCC 27255 GenBank no. (GI) 854409
RBR-216S rRNARuminococcus bromii ATCC 27255 GenBank no. (GI) 854409
RBR-316S rRNARuminococcus bromii ATCC 27255 GenBank no. (GI) 854409
RCA-116S rRNARuminococcus callidus ATCC 27760 GenBank no. (GI) 854410
RCA-216S rRNARuminococcus callidus ATCC 27760 GenBank no. (GI) 854410
RCA-316S rRNARuminococcus callidus ATCC 27760 GenBank no. (GI) 854410
RAL-116S rRNARuminococcus albus ATCC 27210 GenBank no. (GI) 854408
RAL-216S rRNARuminococcus albus ATCC 27210 GenBank no. (GI) 854408
RAL-316S rRNARuminococcus albus ATCC 27210 GenBank no. (GI) 854408
BIL-116S rRNABifidobacterium longum ATCC 15707 GenBank no. (GI) 13276118
BIL-216S rRNABifidobacterium longum ATCC 15707 GenBank no. (GI) 13276118
BIL-316S rRNABifidobacterium longum ATCC 15707 GenBank no. (GI) 13276118
BIA-116S rRNABifidobacterium adolescentis ATCC 15703 GenBank no. (GI) 13160574
BIA-216S rRNABifidobacterium adolescentis ATCC 15703 GenBank no. (GI) 13160574
BIA-316S rRNABifidobacterium adolescentis ATCC 15703 GenBank no. (GI) 13160574
BIN-116S rRNABifidobacterium infantis ATCC 15697 GenBank no. (GI) 13276116
BIN-216S rRNABifidobacterium infantis ATCC 15697 GenBank no. (GI) 13276116
BIN-316S rRNABifidobacterium infantis ATCC 15697 GenBank no. (GI) 13276116
EBI-116S rRNAEubacterium biforme ATCC 27806 GenBank no. (GI) 174515
EBI-216S rRNAEubacterium biforme ATCC 27806 GenBank no. (GI) 174515
EBI-316S rRNAEubacterium biforme ATCC 27806 GenBank no. (GI) 174515
EAE-116S rRNAEubacterium aerofaciens ATCC 25986 GenBank no. (GI) 5030911
EAE-216S rRNAEubacterium aerofaciens ATCC 25986 GenBank no. (GI) 5030911
EAE-316S rRNAEubacterium aerofaciens ATCC 25986 GenBank no. (GI) 5030911
LAA-116S rRNALactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004
LAA-216S rRNALactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004
LAA-316S rRNALactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004
ECO-116S rRNAEscherichia coli ATCC 25922 GenBank no. (GI) 7110561
ECO-216S rRNAEscherichia coli ATCC 25922 GenBank no. (GI) 7110561
ECO-316S rRNAEscherichia coli ATCC 25922 GenBank no. (GI) 7110561
EFA-116S rRNAEnterococcus faecium ATCC 19434 GenBank no. (GI) 5578754
EFA-216S rRNAEnterococcus faecium ATCC 19434 GenBank no. (GI) 5578754
EFA-316S rRNAEnterococcus faecium ATCC 19434 GenBank no. (GI) 5578754
GNSB-94116S rRNAphylum Chloroflexi (green nonsulfur bacteria)
CFX122316S rRNAphylum Chloroflexi (green nonsulfur bacteria)
CFX10916S rRNAsome members of the class Chloroflexi
CFX78416S rRNAsome members of the class Anaerolineae
EUK119518S rRNAEukarya
Acac194S-S-Acac-0194-a-A-1816S rRNAAnaerostipes caccae
Rint1102S-S-Rint-1102-a-A-1816S rRNARoseburia intestinalis, human gut isolates L1-952, L1-93, L1-8151, L1-810, and L1-82
Cinn447S-S-Cinn-0447-a-A-1816S rRNAClostridium innocum
Sple450S-S-Sple-0450-a-A-1816S rRNAStreptococcus pleomorphus
Glsc40718S rRNAGlaucoma scintillans
Glsc41318S rRNAGlaucoma scintillans
Glsc65118S rRNAGlaucoma scintillans
Glsc112918S rRNAGlaucoma scintillans
R-BT06516S rRNAsubgroup of Betaproteobacteria
R-FL61516S rRNAsubgroup of Bacteriodetes
Ehal578S-*-Ehal-0578-a-A-1816S rRNAEubacterium hallii, E. hallii L2-7
Fpra655S-*-Fpra-0655-a-A-1816S rRNAFaecalibacterium prausnitzii A2-165 and L2-6
Rint623S-*-Rint-0623-a-A-1816S rRNARoseburia cecicola, Roseburia intestinalis, human gut isolates L1-81, L1-83, L1-8151, L1-82, L1-952, L1-810, L1-93, A2-194, and A1-86, bacterium clones adhufec8, adhufec225, adhufec150, and adhufec75.25 rumen clones 4C28d-8, 4C3d-14, and 3C3d-8
Emul183S-S-Emul-0183-a-A-1816S rRNAEubacterium multiforme
Esab1467S-S-Esab-1467-a-A-1816S rRNAEubacterium saburreum
Eram997S-S-Eram-0997-a-A1816S rRNAEubacterium ramulus
TGP69016S rRNAPelotomaculum thermopropionicum
Pchl45416S rRNAPseudomonas chlororaphis
muD118S rRNAPseudo-Nitzschia multiseries (Bacilliarophyceae)
auD118S rRNAPseudo-Nitzschia australis (Bacilliarophyceae)
puD118S rRNAPseudo-Nitzschia pungens (Bacilliarophyceae)
BOLI01S-Sc-Boli-1591(P. globosa)-a-A18S rRNABolidophyceae
BOLI02S-Sc-Boli-582(P. globosa)-a-A-18S rRNABolidophyceae
CHLO0218S rRNAChlorophyta
CHLO0118S rRNAMost Chlorophyta, some Non-Chlorophyta
NCHLO0118S rRNAMost Non-Chlorophyta, some Chlorophyta (Chromista)
PI118S rRNAParaphysomonas imperforata (Chrysophyceae)
PI218S rRNAParaphysomonas imperforata (Chrysophyceae)
PIMP168318S rRNAParaphysomonas imperforata (Chrysophyceae)
PIMP63518S rRNAParaphysomonas imperforata (Chrysophyceae)
PIMP63518S rRNAParaphysomonas imperforata (Chrysophyceae)
PV118S rRNAParaphysomonas vestita (Chrysophyceae)
PV218S rRNAParaphysomonas vestita (Chrysophyceae)
PV318S rRNAParaphysomonas vestita (Chrysophyceae)
PV418S rRNAParaphysomonas vestita (Chrysophyceae)
PV518S rRNAParaphysomonas vestita (Chrysophyceae)
405_Pro16S rRNAProchlorococcus (Cyanophyceae)
181_ProHLI16S rRNAProchlorococcus HLI (Cyanophyceae)
645_ProHLI16S rRNAProchlorococcus HLI (Cyanophyceae)
645_ProHLII16S rRNAProchlorococcus HLII (Cyanophyceae)
1445_ProNATL16S rRNAProchlorococcus LL (Cyanophyceae)
181_ProLL16S rRNAProchlorococcus LL (Cyanophyceae)
645_ProLL16S rRNAProchlorococcus LL (Cyanophyceae)
405_Syn16S rRNASynechococcus (Cyanophyceae)
NA118S rRNAAlexandrium tamarense (North America)
P.pisc18S rRNAPfiesteria piscicida
EUK120918S rRNAEukarya
EUK309RS-D-Euca-0309-a-A-1718S rRNAEukarya
EUK502RS-D-Euca-0502-a-A-1518S rRNAEukarya
PAO651 (ACCBA651)S-G-Accba-0651-a-A-1816S rRNAMost members of the Candidatus Accumulibacter cluster
GAOQ43116S rRNACandidatus Competibacter phosphatis
GAOQ98916S rRNACandidatus Competibacter phosphatis
Erec207S-S-Erec-0207-a-A-1816S rRNAEubacterium rectale sp. strain A1-86
ACAC16S rRNAActinobacillus actinomycetemcomitans
B(T)AFO16S rRNATannerella forsythensis (Bacteroides forsythus)
POGI16S rRNAPorphyromonas gingivalis
PRIN16S rRNAPrevotella intermedia
FUSO16S rRNAFusobacterium spp.
VEPA16S rRNAVeillonella parvula
Tsrda641S-*-Tsrda-0641-a-A-2016S rRNADesulfobacteraceae DGGE clone T1
Tsrda644S-*-Tsrda-0644-a-A-1916S rRNADesulfobacteraceae DGGE clone T1
Edn656S-*-Edn-0656-a-A-1816S rRNADesulfobacteraceae DGGE clone E1
Edsrb656S-*-Edsrb-0656-a-A-1916S rRNADesulfobacteraceae DGGE clone E2
CREN51216S rRNAmost Crenarchaeota
CREN56916S rRNAmost environmental Crenarchaeota
EURY49616S rRNAMethanomicrobiales group and VAL 47, VAL 1, VAL9, VAL78 clones
EURY49916S rRNAMethanosarcina, Methanosaeta, Methanomicrobiales groups and VAL 47,VAL 1, VAL9, VAL78 clones
EURY51416S rRNAmost Euryarchaeota
SYBAC697S-*-Sybac-0697-a-A-1816S rRNADesulforhabdus spp., Desulfovirga spp., Syntrophobacter spp.
SYBAC587aS-*-Sybac-0587-a-A-1816S rRNAUncultured Syntrophobacter-related bacteria (Schlöppnerbrunnen I soil clones SbISybac13, 15, and 19 Schlöppnerbrunnen II soil clones SbIISybac12-1, 1-2, 3-2, and 13-2)
SYBAC587bS-*-Sybac-0587-b-A-1816S rRNAUncultured Syntrophobacter-related bacteria (Schlöppnerbrunnen I soil clones SbISybac16 Schlöppnerbrunnen II soil clones SbIISybac25-1, 6-2, and 8-2)
DSMON999S-*-Dsmon-0999-a-A-1816S rRNAUncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2, 3, 4, 5, and 8 Cadagno Lake clones 618, 624, 626, 650, and 651)
DSMON1283S-*-Dsmon-1283-a-A-1816S rRNAUncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2, 3, 4, 5, and 8)
DSMON447S-*-Dsmon-0447-a-A-1816S rRNAUncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon3, 5, and 8)
DSMON468aS-*-Dsmon-0468-a-A-1816S rRNAUncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon3, 5, and 8)
DSMON446S-*-Dsmon-0446-a-A-1816S rRNAUncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2 and 4)
DSMON468bS-*-Dsmon-0468-b-A-1816S rRNAUncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2 and 4)
AZA1006S-*-Aza-1006-a-A-1816S rRNAMost members of the Azoarcus cluster
RHC630S-*-RHC-0630-a-A-1816S rRNAMost Thauera, Zoogloea, and Rhodocyclus spp.
RHC143S-*-RHC-0143-a-A-1816S rRNAMost members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages, Zoogloea spp., and few members of the Azoarcus-Thauera-Denitromonas lineage
DAF1030S-*-D.A.F-1030-a-A-1816S rRNASome bacteria of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus lineage
AZAR483S-*-Azar-0483-a-A-1816S rRNAAzoarcus cluster
AZA444S-*-Aza-0444-a-A-1816S rRNAAzoarcus evansii, Azoarcus tolulyticus str.Td-3, Azoarcus tolulyticus str.Td-19, Azoarcus sp. ToN1
AZTOLY452S-*-Az.toly-0452-a-A-1816S rRNAAzoarcus tolulyticus
AZANBU228S-*-Az.an.bu-0228-a-A-1816S rRNAAzoarcus anaerobius, Azoarcus buckelli
AZAN130S-S-Az.an-0130-a-A-1816S rRNAAzoarcus anaerobius
AZAN465S-S-Az.an-0465-a-A-1816S rRNAAzoarcus anaerobius
AZA463S-*-Aza-0463-a-A-1816S rRNAAzoarcus sp.PbN1 and HxN1
AZA835S-*-Aza-0835-a-A-1816S rRNAAzoarcus sp.PbN1
AZA452S-*-Aza-0452-a-A-1816S rRNAAzoarcus sp. PH002, Azoarcus sp. CR23
AZOA844S-*-Azoa-0844-a-A-1816S rRNAAzoarcus sp. PH002, Azoarcus sp. CR23
ATDe442S-*-ATDe-0442-a-A-1816S rRNAActivated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage
ATDe830S-*-ATDe-0830-a-A-1816S rRNAActivated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage
S3-486S-*-S3-0486-a-A-1816S rRNAactivated sludge clone S3
A33-587S-*-A33-0587-a-A-1816S rRNAactivated sludge clone A33
AZIND433S-S-Az.ind-0433-a-A-1816S rRNAAzoarcus indigens, Azoarcus sp. BH72
AZIND449S-St-Az.ind-0449-a-A-1816S rRNAAzoarcus sp. BH72
AZIND455S-St-Az.ind-0455-a-A-1816S rRNAAzoarcus indigens
AZCOM447S-S-Az.com.-0447-a-A-1816S rRNAAzoarcus communis
THAU832S-*-Thau-0832-a-A-1816S rRNAThauera spp.
THAU455aS-*-Thau-0455-a-A-1816S rRNAThauera chlorobenzoica, Thauera mechernichensis
THAU443S-*-Thau-0443-a-A-1816S rRNAThauera selenatis, Thauera phenylacetica, and related Thauera spp.
THAU580S-*-Thau-0580-a-A-1816S rRNAThauera selenatis, soil clone AX39
THAU455bS-*-Thau-0455-b-A-1816S rRNAThauera sp. PIV-1, TCB-transforming microbial consortium clone SJA-186
THAU468S-*-Thau-0468-a-A-1816S rRNAThauera sp. PIV-1, TCB-transforming microbial consortium clone SJA-186
THATE461S-*-Tha.te-0461-a-A-1816S rRNAThauera terpenica
DENAR176S-*-Denar-0176-a-A-1816S rRNADenitromonas aromaticus
DENAR453S-*-Denar-0453-a-A-1816S rRNADenitromonas aromaticus
DENAR845S-*-Denar-0845-a-A-1816S rRNADenitromonas aromaticus
ZOGLO828S-*-Zoglo-0828-a-A-1816S rRNAZoogloea spp.
ZOGLO455S-*-Zoglo-0455-a-A-1816S rRNASome members of the Zoogloea lineage (activated sludge clones H13, H11, H22, H10, H40, H27, and S21), not Z. ramigera and Z. resiniphila
ZORAM211S-*-Zo.ram-0211-a-A-1816S rRNAZoogloea ramigera
ZORAM441S-*-Zo.ram-0441-a-A-1816S rRNAZoogloea ramigera
RHAC855S-*-RhAc-0855-a-A-1816S rRNARhodocyclus spp., most members of the Candidatus Accumulibacter cluster
ACCBA443S-*-Accba-0443-a-A-1816S rRNASome members of the Candidatus Accumulibacter cluster
RHO828S-G-Rho-0828-a-A-1816S rRNARhodocyclus spp.
RHO842S-G-Rho-0842-a-A-16S rRNARhodocyclus spp.
RHOTE1280S-*-Rho.te-1280-a-A-1816S rRNARhodocyclus tenuis DSM109, Rhodocyclus tenuis SW18
AZP737S-G-Azp-0737-a-A-1816S rRNAMost Azospira spp.
AZP471S-G-Azp-0471-a-A-1816S rRNAMost Azospira spp.
AZP456S-G-Azp-0456-a-A-1816S rRNAMost Azospira spp.
DCMAG455S-S-Dcm.ag-0455-a-A-1816S rRNADechloromonas agitata
DEMFE455S-*-Dem.Fe-0455-a-A-1816S rRNAFerribacterium limneticum, few Dechloromonas spp.
AZV211S-G-Azv-0211-a-A-1816S rRNAAzovibrio spp.
AZVRE847S-*-Azv.re-0847-a-A-1816S rRNAAzovibrio restrictus
STEBA468S-*-Steba-0468-a-A-1816S rRNASome members of the Sterolibacterium lineage (activated sludge clones S28, A13, S40, H12, H23, and H20)
STEBA635S-*-Steba-0635-a-A-1816S rRNAFew members of the Sterolibacterium lineage (activated sludge clones S28 and A13)
STEBA643S-*-Steba-0643-a-A-1816S rRNAFew members of the Sterolibacterium lineage (activated sludge clones S40, H12, H23, and H20)
STEBA214S-*-Steba-0214-a-A-1816S rRNAFew members of the Sterolibacterium lineage (clones SBR1001, SBR2080, and GC24)
QUACO135S-*-Quaco-0135-a-A-1816S rRNAQuadricoccus australiensis, reactor clone PHOS-HE23
BTWO663S-*-Btwo-0663-a-A-1816S rRNAmost Rhodocyclales, but not the Rhodocyclales environmental cluster 1, Zoogloea spp., and Dechlorosoma-Azospira cluster
ATD1459S-*-ATD-1459-a-A-1816S rRNAmost Azoarcus spp. and Thauera spp., Denitromonas sp.
TH3 (AZTHA222,RHC222)S-*-RHC-0222-a-A-1816S rRNASome members of the Azoarcus-Thauera-Denitromonas, Zoogloea, and Azovibrio lineages
AZIN1023S-*-Az.in-1023-a-A-1816S rRNAAzoarcus sp. BH72, Azoarcus indigens
TH14 (RHC175b)S-*-RHC-0175-b-A-1816S rRNASome Thauera, Azoarcus, Zoogloea, Sterolibacterium, and Azovibrio spp.
AZA1252S-*-Aza-1252-a-A-1816S rRNAAzoarcus evansii, Azoarcus toluvorans, Azoarcus tolulyticus, Azoarcus toluclasticus
ATDe467S-*-ATDe-0467-a-A-1816S rRNAActivated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage
ZOGLO1416S-G-Zoglo-1416-a-A-1816S rRNAZoogloea spp.
ACCBA651S-*-Accba-0651-a-A-1816S rRNAmost bacteria of the Candidatus Accumulibacter phosphatis cluster
ACCBA455S-*-Accba-0455-a-A-1816S rRNASome members of the Candidatus Accumulibacter cluster
ACCBA846S-*-Accba-846-a-A-1816S rRNAMost members of the Candidatus Accumulibacter cluster
STEBA448S-*-Steba-0448-a-A-1816S rRNASome members of the Sterolibacterium lineage (activated sludge clones S28, A13, S40, H12, H23, and H20)
Cap142816S rRNACandidatus capitivii acidiprotistae
EUKb119318S rRNAnearly all Eukarya
EUKb50318S rRNAnearly all Eukarya
EUKb31018S rRNAnearly all Eukarya
LKC59S-*-eProt-0059-a-A-1816S rRNAEpsilonproteobacterial group I from Lower Kane Cave
LKC1006S-*-eProt-1006-a-A-1816S rRNAEpsilonproteobacterial group II from Lower Kane Cave
HHY16S rRNAHaliscomenobacter hydrossis
TNI16S rRNAThiothrix nivea
LMU16S rRNALeucothrix mucor
21N16S rRNAEikelboom type 021N strain II-26
LDI16S rRNALeptothrix discophora
SNA16S rRNASphaerotilus natans
Cp116S rRNAClostridium perfringens
Cp216S rRNAClostridium perfringens
Cp323S rRNAClostridium perfringens
ARBA (23-mer)16S rRNAArcobacter spp.
ARBA (27-mer)16S rRNAArcobacter spp.
ARBU (24-mer)16S rRNAArcobacter butzleri
Hp16S-116S rRNAHelicobacter pylori
beta-57216S rRNACandidatus Snodgrassella alvi or Beta (symbiotic Neisseriaceae phylotype in honey bee)
OalgGAM44516S rRNAGammaproteobacterial, sulfur-oxidizing symbiont of Olavius algarvensis
OalgDEL13616S rRNADeltaproteobacterial symbiont of Olavius algarvensis
I. leu. (IleuSYM581)16S rRNAGammaproteobacterial symbiont of Inanidrilus leukodermatus
O. tan. (OtanSYM581)16S rRNAGammaproteobacterial symbiont of Olavius tantalus
PRYM0218S rRNAPrymnesiophyceae
PTB-6-7/103016S rRNAPTB 6/7 cluster
PTB-6-7/99716S rRNAPTB 6/7 cluster
PTB-1/48216S rRNAPTB 1 cluster, Stappia stellulata, bacterium (AB010864)
PTB-1/101416S rRNAPTB 1 cluster, Stappia stellulata
PTB-all/64616S rRNAAlphaproteobacterial clade (all PTB)
PELA0218S rRNAPelagophyceae clade containing Aureococcus, Pelagomonas, Pulvinaria, CCMP 1395
PELA0118S rRNAPelagophyceae
PAO46216S rRNACandidatus Accumulibacter phosphatis
Rc98816S rRNARhodocyclus spp., Candidatus Accumulibacter phosphatis, and related bacteria
ALBO57716S rRNAAlcaligenes, Bordetella and close relatives
DEV67716S rRNADevosia riboflavina and relatives
ENT18316S rRNAEnterobacteriaceae
FLX10116S rRNAFlavobacterium ferrugineum, Flexibacter elegans, F. sancti
MET121716S rRNAMethylophilus
NEV81716S rRNANevskia ramosa and relatives
PED67216S rRNAPedobacter heparinus and relatives
SPH49216S rRNASphingomonas, Erythrobacter
Ecras65118S rRNAEuplotes crassus
Ecras124618S rRNAEuplotes crassus
Evan65118S rRNAEuplotes vannus
Emin61918S rRNAEuplotes minuta
Emin65118S rRNAEuplotes minuta
PNA18S rRNAMacrorhabdus ornithogaster
Mcaps-103216S rRNAMethylocapsa acidiphila
Msint-126816S rRNAMethylosinus trichosporium
Msins-64716S rRNAMethylosinus sporium
Mcyst-143216S rRNAMethylocystis
Mcyst-126116S rRNApeat-inhabiting subgroup of Methylocystis spp.
Cluster6a192 (6a192)S-*-Nsm6a-0192-a-A-2016S rRNANitrosomonas oligotropha lineage (Cluster 6a)
PBR2S-S-Pbr2-0182-a-A-1916S rRNABifidobacterium breve
RdCap50316S rRNARhodobacter capsulatus
EBAC1790S-*-EBAC-1790-a-A-1823S rRNAEnterobacteriaceae
Ntspa685S-G-Ntspa-0685-a-A-2216S rRNANitrospira moscoviensis, Nitrospira marina and 710-9 clone
Ntspa454S-*-Ntspa-0454-a-A-1916S rRNANitrospira moscoviensis 710-9 clone
SymA18S rRNASymbiodinium clade A
SymB18S rRNASymbiodinium clade B
SymC18S rRNASymbiodinium clade C
Myc657S-*-Myc-0657-a-A-1616S rRNAMycobacterium subdivision (mycolic acid-containing actinomycetes)
Hpy16S16S rRNAHelicobacter pylori
COR653S-*-Cor-0653-a-A-1816S rRNACoriobacterium group (Coriobacterium and Collinsella)
ATO291S-*-Ato-0291-a-A-1716S rRNAAtopobium cluster
Ntcoc206S-*-Ntcoc-206-a-A-1816S rRNANitrococcus mobilis
Ntspn994S-*-Ntspn-994-a-A-1816S rRNANitrospina gracilis
Nscry1004S-*-Nscry-1004-a-A-1916S rRNANitrosomonas cryotolerans
Nscoc65S-*-Nscoc-65-a-A-1816S rRNANitrosococcus oceani, Nitrosococcus halophilus
Nscoc1248S-*-Nscoc-1248-a-A-1816S rRNANitrosococcus oceani, Nitrosococcus halophilus
Dhe1259t16S rRNAsome Dehalococcoides spp.
Dhe1259c16S rRNAsome Dehalococcoides spp.
Sca1309S-G-Sca-1309-a-A-2116S rRNAgenus Candidatus Scalindua
Scabr1114S-*-Scabr-1114-a-A-2216S rRNACandidatus Scalidua brodae
Amx368S-*-Amx-0368-a-A-1816S rRNAall ANAMMOX bacteria
BS820S-*-BS-820-a-A-2216S rRNACandidatus Scalidua wagneri, Candidatus Scalidua sorokinii
NSMR7616S rRNANitrosomonas marina-like ammonia-oxidizing bacteria
NSMR3416S rRNANitrosospira tenius-like ammonia-oxidizing bacteria
Nmo21816S rRNANitrosomonas oligotropha-lineage
NITROSO4E16S rRNABetaproteobacterial ammonia-oxidizing bacteria
Bfra602S-*-Bfra-0602-a-A-1916S rRNABacteroides fragilis group
Bdis656S-*-Bdis-0656-a-A-1816S rRNABacteroides distasonis
Clit135S-*-Clit-0135-a-A-1916S rRNAsome of the Clostridium lituseburense group (Clostridium cluster XI)
Chis150S-*-Chis-0150-a-A-2316S rRNAmost of the Clostridium histolyticum group (Clostridium cluster I and II)
Erec482S-*-Erec-0482-a-A-1916S rRNAmost of the Clostridium coccoides-Eubacterium rectale group (Clostridium cluster XIVa and XIVb)
Strc493S-*-Strc-0493-a-A-1916S rRNAmost Streptococcus spp. and some Lactococcus spp.
GB16S rRNAnovel gammaproteobacterial group
GB_G1 (GAOQ989)16S rRNAnovel gammaproteobacterial group
GB_G216S rRNAnovel gammaproteobacterial group
GB_1 and 216S rRNAnovel gammaproteobacterial group
GB_216S rRNAnovel gammaproteobacterial group
GB_316S rRNAnovel gammaproteobacterial group
GB_416S rRNAnovel gammaproteobacterial group
GB_516S rRNAnovel gammaproteobacterial group
GB_6 (Gam1019)16S rRNAnovel gammaproteobacterial group
GB_716S rRNAnovel gammaproteobacterial group
CFB56016S rRNAsubgroup of Bacteroidetes
CFB56216S rRNAsubgroup of Bacteroidetes
CFB37616S rRNAsubgroup of Bacteroidetes
Lis-63716S rRNAListeria spp., except L. grayi
Mka22016S rRNAsubgroup of Bacteroidetes
Mkb22116S rRNAsubgroup of Bacteroidetes
Mkc21916S rRNAsubgroup of Bacteroidetes
Mkd111116S rRNAsubgroup of Bacteroidetes
SGR22016S rRNASaprospira grandis
SGR120016S rRNASaprospira grandis and relatives
SGR142516S rRNASaprospira grandis and relatives
Bak65516S rRNACandidatus Magnospira bakii
Bak140816S rRNACandidatus Magnospira bakii
ARC9416S rRNAArcobacter
ARC143016S rRNAArcobacter
ACA652b16S rRNAsome unknown Acinetobacter-like species
T25-102816S rRNAclone T25 and T19 of a subgroup within the Betaproteobacteria
T25-22016S rRNAclone T25 and other clones of a subgroup within the Betaproteobacteria, not clone T19
T28-64916S rRNAclone T28 and T29 of a subgroup within the Alphaproteobacteria, Sphingomonas capsulata
T28-143516S rRNAclone T28 and T29 of a subgroup within the Alphaproteobacteria
III142116S rRNAcluster III of Clostridiaceae
IV81516S rRNAcluster IV of Clostridiaceae
IX85416S rRNAcluster IX of Clostridiaceae
UCA112416S rRNAFirmicutes (low G+C Gram-positives) subgroup
UCB80716S rRNAFirmicutes (low G+C Gram-positives) subgroup
UCC92616S rRNAFirmicutes (low G+C Gram-positives) subgroup
CFB93516S rRNABacteroides-Porphyromonas-Prevotella subgroup
BLS129516S rRNABacillus-Lactobacillus-Streptococcus subgroup
SPIRO140016S rRNAsubgroup of the Spirochaetaceae
GAM42_C103323S rRNAcurrently unknown
Lbrev16S rRNALactobacillus brevis
Lcoll16S rRNALactobacillus collinoides
Lcory16S rRNALactobacillus coryniformis
Lfarc16S rRNALactobacillus farciminis
Lhilg16S rRNALactobacillus hilgardii
Lmali16S rRNALactobacillus mali
Lpara16S rRNALactobacillus casei, Lactobacillus paracasei
Lzeae16S rRNALactobacillus zeae, Lactobacillus casei
Ooeni16S rRNAOenococcus oeni
Pdamn16S rRNAPediococcus damnosus
Pparv16S rRNAPediococcus parvulus
Urobe63aS-*-Urobe-0063-a-A-2016S rRNAuncultured Ruminococcus obeum-like bacteria
Urobe63bS-*-Urobe-0063-b-A-2016S rRNAuncultured Ruminococcus obeum-like bacteria
CFX123816S rRNAChloroflexus
RFX123816S rRNARoseiflexus assemblage
Pchl45416S rRNAPseudomonas chlororaphis
b9116S rRNAmealybug betaproteobacterial endosymbionts
b16216S rRNAmealybug betaproteobacterial endosymbionts
b88616S rRNAmealybug betaproteobacterial endosymbionts
b127316S rRNAmealybug betaproteobacterial endosymbionts
g8016S rRNAsecondary endosymbiont of Planococcus citri
g45816S rRNAsecondary endosymbiont of Planococcus citri
g63016S rRNAsecondary endosymbiont of Planococcus citri
g127316S rRNAsecondary endosymbiont of Planococcus citri
NLIMI 91S-G-N.limI-0091-a-A-1816S rRNANostocoida limicola I
NLIMII 175S-S-N.limII-0175-a-A-1816S rRNANostocoida limicola II strains except strain Ben 70
NLIMII 192S-S-N.limII-0192-a-A-1816S rRNANostocoida limicola II strain Ben 70
NLIMIII 301S-S-N.limIII-0301-a-A-1816S rRNANostocoida limicola III strains
NLIMIII 729S-S-N.limIII-0729-a-A-1816S rRNANostocoida limicola III strain Ben 220
NLIMIII 830S-S-N.limIII-0830-a-A-1816S rRNANostocoida limicola III strains except Ben 220
Bmy843S-*-Bmy-0843-a-A-1816S rRNABacillus
Ver620S-*-Ver-0620-a-A-1816S rRNAVerrucomicrobium
MIB661S-S-Bacm-0661-a-A-1816S rRNAmouse intestinal bacteria
MIB724S-S-Bacm-0724-a-A-1816S rRNAmouse intestinal bacteria
LGC16S rRNAFirmicutes (low G+C Gram-positives)
Clost I16S rRNAsubgroup of Clostridia cluster I and II
AW16S rRNAsome Acetobacterium species, E. limosum
DSV (DSV321)16S rRNASome Desulfovibrionaceae, Desulfomicrobiaceae, Desulfohalobiaceae, and other Bacteria
AMAR 839S-G-AMAR-0839-a-A-2216S rRNAAmaricoccus spp.
Cpara18S rRNACandida parapsilosis
FNEC16S rRNAFusobacterium necrophorum
RSOLA23S rRNARalstonia solanacearum, Ralstonia syzygii, blood disease bacterium (BLDB)
RSOLB23S rRNARalstonia solanacearum, Ralstonia syzygii, blood disease bacterium (BLDB)
TTI-73216S rRNATreponema cluster I
Dev1-48616S rRNAectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp.
Dev14-48616S rRNAectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp.
Dev14-Tp65216S rRNAectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp.
Oxy8-Tp44416S rRNAectosymbiotic spirochetes on Oxymonas sp. and Stephanonympha sp.
Oxy26-Tp128116S rRNAectosymbiotic spirochetes on Oxymonas sp. and Stephanonympha sp.
Doh29918S rRNAAMD Dothideomycete fungi
Eur110818S rRNAEurotiomycetes, including AMD fungi
Oil84518S rRNAAMD Dothideomycete fungi
AcRic90S-*-AcEnd-0090-a-A-1816S rRNARickettsia-related endosymbionts of Acanthamoeba strains UWC8 and UWC36
AcRic1196S-*-AcEnd-1196-a-A-1816S rRNARickettsia-related endosymbionts of Acanthamoeba strains UWC8 and UWC36
1109TY1R16S rRNAMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1109TY2R16S rRNAMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1109TY3R16S rRNAMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1174TY1R16S rRNAMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1174TY2R16S rRNAMethanobrevibacter-related endosymbionts of Reticulitermes speratus
1174TY3R16S rRNAMethanobrevibacter-related endosymbionts of Reticulitermes speratus
MPH-73016S rRNAMethylophaga
MPHm-99416S rRNAMethylophaga marina
REX7216S rRNABacillus
LGC353b16S rRNABacillus
prV216S rRNAuncultured alphaproteobacterium
prV616S rRNAuncultured alphaproteobacterium
prV816S rRNAuncultured alphaproteobacterium
B616S rRNAsubgroup of Brucella spp.
B916S rRNAsubgroup of Brucella spp.
B1316S rRNAsubgroup of Brucella spp.
Ap66518S rRNAAureobasidium pullulans
Ch61418S rRNACladosporium herbarum
U51916S rRNAall known 18S-like rRNA sequences
Aph1180S-G-Aph-1180-a-A-1816S rRNACandidatus Amoebophilus asiaticus
RhabdoS-S-RhaC-0992-a-A16S rRNACandidatus Rhabdochlamydia porcellionis
SBR9-1aS-D-s91a-0578-b-A-2016S rRNAAlphaproteobacterial SBR9 clone 1 (AY254694)
SBR9-1bS-D-s91a-0778-b-A-1816S rRNAAlphaproteobacterial SBR9 clone 1 (AY254694)
Staph747S-G-Staph-0747-a-A-1916S rRNAStaphylococcus spp.
PAG59S-G-Pan-0059-a-A-1816S rRNAPantoea spp.
Rick_527S-F-Rick-0527-a-A-1616S rRNAmembers of the Rickettsiaceae family Caedibacter caryophilus
Rick_1442S-F-Rick-1442-a-A-1816S rRNAmembers of the Rickettsiaceae family
ARM98016S rRNAnovel AMD euryarchaeota
cWTF91516S rRNAAMD nanoarchaeal lineage
Azo644 (AZA645)S-*-Aza-0645-a-A-1816S rRNAMost members of the Azoarcus cluster
A08KA458S-*-A08KA-0459-a-A-1816S rRNAOral strain A08KA lineage
BuCc16S rRNABuchnera aphidicola Cc
SCc16S rRNAS-Symbiont R-Type
WCc16S rRNAWolbachia
Apur453S-S-Lpcpur-0453-a-A-2616S rRNALamprocystis purpurea (DSM4197), strain A12 3 and clone 345, Lake Cadagno.
Cmok453S-S-Chrok-0453-a-A-2616S rRNAChromatium okenii (DSM169) and clone 359, Lake Cadagno.
Laro453S-S-Lpcro-0453-a-A-2616S rRNALamprocystis roseopersicina (DSM229) and clone 136, Lake Cadagno
S453DS-*-Lpc-0453-a-A-2616S rRNALamprocystis-related bacteria (strain D21 and clone 261, Lake Cadagno)
Cmvi453S-S-Alcvi-0453-a-A-2616S rRNAAllochromatium vinosum (DSM180)
S453FS-*-Lpc-0453-b-A-2616S rRNALamprocystis - related bacteria (clones 335, 371 and strain cad16, Lake Cadagno)
DSC213S-S-Dscthz-0213-a-A-1816S rRNADesulfocapsa thiozymogenes
DSC441S-*-Dsc-0441-a-A-1916S rRNAFew Desulfocapsa
S453HS-*-Tcs-0453-a-A-2616S rRNAThiocystis minor-related bacteria (clones 222, 13 and strain H1.1, Lake Cadagno)
S448S-*-Tcs-0448-a-A-2116S rRNAThiocystis gelatinosa-related bacteria (clone 130 and strain 448.10, Lake Cadagno)
SRB44116S rRNAFew Desulfobulbaceae
DsmA455S-*-Dmn-0455-a-A-2616S rRNADesulfomonile-related Lake Cadagno clones 618, 624, 626, and 651
DsmB455S-*-Dmn-0455-b-A-2616S rRNADesulfomonile-related Lake Cadagno clone 650
Chlp441S-S-Chlphb-0441-a-A-2316S rRNAChlorobium phaeobacteroides (DSM 266), strain 1VIID7 and clone 366 Lake Cadagno.
Chlc190S-S-Chlctf-0190-a-A-2216S rRNAChlorobium clathratiforme (DSM 5477), strain 4DE and clones 810, 827, 849 Lake Cadagno.
UV7-763S-St-UV7-763-a-A-1816S rRNAParachlamydia sp. UV-7
TG1-Ta-RsaS-S-E.tri-1023-a-A-2016S rRNACandidatus Endomicrobium trichonymphae
TG1-Pv-RsaS-S-E.pyr-1023-a-A-2016S rRNACandidatus Endomicrobium pyrsonymphae
Arglo32S-O-Arglo-0032-a-A-2016S rRNAArchaeoglobales
Aqui1197S-O-Aqui-1197-a-A-2016S rRNAAquificales
Tcoc164S-O-Tcoc-0164-a-A-2016S rRNAThermococcales
Eca5823S rRNAEnterococcus casseliflavus
Edr5823S rRNAEnterococcus durans
Ehr5823S rRNAEnterococcus hirae
Efm0923S rRNAEnterococcus faecium
Ema58i23S rRNAEnterococcus malodoratus
Esasu58i23S rRNAEnterococcus saccharolyticus, Enterococcus sulfureus
Poly_862S-G-Poly-0862-a-A-1816S rRNAPolynucleobacter necessarius-cluster
APL63716S rRNAAplasma, acid mine drainage Thermoplasmatales
GPL64216S rRNAGplasma, acid mine drainage Thermoplasmatales
TPL75916S rRNATplasma, Thermoplasma spp.
BPL83016S rRNABplasma, acid mine drainage Thermoplasmatales
EPL62316S rRNAEplasma, acid mine drainage Thermoplasmatales
Meiot83616S rRNAMeiothermus sp.
Proca438S-G-Proca-0438-a-A-1816S rRNACandidatus Procabacter sp.
MB31116S rRNAMethanobacteriales
MB117416S rRNAMethanobacteriales (minus Methanothermus)
MC50416S rRNAMethanocaldococcaceae(+some Methanococcaceae)
MC110916S rRNAMethanococcaceae
MG1200b16S rRNAmost Methanomicrobiales
MS82116S rRNAMethanosarcina
MS141416S rRNAMethanosarcina, Methanococcoides, Methanolobus
MSMX86016S rRNAMethanosarcinales (all Methanosarcina and Methanosaeta)
MX82516S rRNAsome Methanosaetaceae
MX825b16S rRNAMethanosaetaceae subgroup
MX825c16S rRNAMethanosaetaceae subgroup
MX136116S rRNAMethanosaetaceae
HEL27416S rRNAHelicobacter sp., Wolinella sp.
HEL71716S rRNAHelicobacter sp., Wolinella sp.
HEP64216S rRNAHelicobacter hepaticus
GAN123716S rRNAHelicobacter ganmani
Actino83716S rRNAspecific for phylotype Rs-Q42/RsW01-017 in Propionibacteriaceae
CTE998-101516S rRNACollimonas sp.
ZNS1439S-*-Znsym-1439-a-A-2016S rRNAZoothamnium niveum ectosymbiont
ZNS196S-*-Znsym-0196-a-A-1916S rRNAZoothamnium niveum ectosymbiont
MPA16S rRNACandidatus Microthrix
PPx3-142816S rRNACandidatus Alysiomicrobium bavaricum
Noli-64416S rRNACandidatus Alysiosphaera europaea
MC2-64916S rRNACandidatus Monilibacter batavus
Sita-64916S rRNACandidatus Sphaeronema italicum
Combo-103116S rRNACandidatus Combothrix italica
Cate-101316S rRNACandidatus Catenimonas italica
MZ116S rRNAThauera spp. mzt1t
GAM42a_T1038_G103123S rRNARepresentatives of the Xanthomonas group
GAM42a_T103823S rRNARepresentatives of the Xanthomonas group
GAM42a_A1041_A104023S rRNARepresentatives of the Xanthomonas group and the Alphaproteobacteria, Brevundimonas diminuta
Cren53716S rRNACrenarchaea
Eury80616S rRNAEuryarchaea
FUNU16S rRNAFusobacterium nucleatum/canifelinum
EICO16S rRNAEikenella corrodens
CARE16S rRNACampylobacter rectus
PnecABCD-44516S rRNAPolynucleobacter cluster
Actino-221S-S-Actino-221-a-A-1816S rRNAActinobacterial PAO
Actino-658S-S-Actino-658-a-A-1816S rRNAActinobacterial PAO
Ih820S-*-Ih820-0820-a-A-1816S rRNADesulfotomaculum subcluster Ih (Pelotomaculum and Cryptanaerobacter)
ProCo1264S-*-ProCo-1264-a-A-2316S rRNARuminococcus productus and relatives
Csac67S-S-Csac-67-a-A-2016S rRNAClostridium saccharogumia
Betthio1001L-G-bThiob-1001-a-A-2123S rRNABetaproteobacterial Thiobacilli
Creno445S-S-Cpoly-445-a-A-1816S rRNACrenothrix polyspora
Cp653-A16S rRNACrenothrix polyspora sequence cluster I
Cp653-B16S rRNACrenothrix polyspora sequence cluster II-IV
Cp1130-A16S rRNACrenothrix polyspora sequence cluster I-II
Cp1130-B16S rRNACrenothrix polyspora sequence cluster III-IV
VIB572a16S rRNAGenus Vibrio
VIB572b16S rRNAother Vibrio/Photobacterium
PSU73016S rRNAGenus Pseudoalteromonas
SHEW22716S rRNAGenus Shewanella
MX825b16S rRNAMethanosaetaceae subgroup
MX825c16S rRNAMethanosaetaceae subgroup
MX136116S rRNAMethanosaetaceae
MG1200b16S rRNAmost Methanomicrobiales
MB31116S rRNAMethanobacteriales
MC50416S rRNAMethanocaldococcaceae
CST44016S rRNAGroup 1 clones (AC044 and AC051), closely related to Clostridium stercorarium
CTH125816S rRNAGroup 2 clones (AC020 and AC033), closely related to Clostridium thermocellum
CUE124016S rRNAGroup 3 clones (AC014 and AC036), closely related to Clostridium sp. strain XB90
CUE64716S rRNAGroup 4 clones (AC007 and AC039)
BCE18216S rRNAGroup 5 clones (AC065 and MC049), closely related to Bacteroides cellulosolvens
DEF988S-S-Bact-1020-a-A-2216S rRNADefluvicoccus vanus-related organisms, cluster 2
FMR073216S rRNAsome iron-oxidising acidophilic Actinobacteria and some acid mine drainage clones
ABl019916S rRNAsome acidophilic Acidobacteriaceae and an acid mine drainage clone
ABl100216S rRNAsome acidophilic Acidobacteriaceae
TM1G013816S rRNAGroup 1 Thiomonas species
TM2G013816S rRNAGroup 2 Thiomonas species
WJ2064616S rRNAacidophilic gamma-Proteobacteria WJ2 and PK51 and some acid mine drainage clones
GALTS008416S rRNAacid mine drainage clones related to Gallionella ferruginea
BSC045916S rRNAacid mine drainage beta-proteobacterial clones
LGC035516S rRNAFirmicutes (Low G+C gram-positive bacteria)
ATT022316S rRNAAcidithiobacillus thiooxidans
Ntspa1431S-*-Ntspa-1431-a-A-1816S rRNASublineage I of the genus Nitrospira
Ntspa1151S-*-Ntspa-1151-a-A-2016S rRNASublineage II of the genus Nitrospira
Apr820S-*-Apr-0820-a-A-2116S rRNACand. “Anammoxoglobus propionicus”
E2d21002S-*-Rhob-1002-a-A-1816S rRNAsome Rhodobacteraceae
E1e3 1150S-*-Ualp-1150-a-A-1816S rRNAsome unclassified Alphaproteobacteria
Ualp-1109S-*-Ualp-1109-a-A-1816S rRNAsome unclassified Alphaproteobacteria
Sphm-0742S-*-Sphm-0742-a-A-1816S rRNAsome Sphingomonadales
Bete-1250S-*-Bete-1250-a-A-1816S rRNAsome unclassified Bacteroidetes
Bete-1419S-*-Bete-1419-a-A-1816S rRNAsome unclassified Bacteroidetes
Chro-1137S-*-Chro-1137-a-A-1816S rRNAsome Chromatiales
Caul-1262S-*-Caul-1262-a-A-1816S rRNAsome Caulobacterales
Ubac-1430S-*-Ubac-1430-a-A-1816S rRNAsome unclassified Bacteria
Ubac-1241S-*-Ubac-1241-a-A-1816S rRNAsome unclassified Bacteria
uBet-0984S-*-uBet-0984-a-A-1816S rRNAsome unclassified Betaproteobacteria
Ubet-0834S-*-Ubet-0834-a-A-1816S rRNAsome unclassified Betaproteobacteria
Ubet-0990S-*-Ubet-0990-a-A-2116S rRNAsome unclassified Betaproteobacteria
Rhoc-0998S-*-Rhoc-0998-a-A-1816S rRNAsome Rhodocyclaceae
Rhoc-1425S-*-Rhoc-1425-a-A-1816S rRNAsome unclassified Rhodocyclaceae
Thio-1032S-*-Thio-1032-a-A-1816S rRNAsome Thiobacillus and some unclassified Betaproteobacteria
Ach-22116S rRNAAchromobacter xylosoxidans
Alc-47616S rRNAAlcaligenes faecalis
Univ907S-*-Univ-0907-a-A-1816S rRNAall organism
Eub927S-D-Eub-0927-a-A-1816S rRNAmost Bacteria
NmIIS-S-Nsom-0120-a-A-2016S rRNANitrosomonas communis lineage
NmIIIS-S-Nsom-0998-a-A-2116S rRNANitrosomonas marina lineage
NmIVS-S-Nsom-1004-a-A-1916S rRNANitrosomonas cryotolerans lineage
Nsr1145S-*-Nsr-1145-a-A-1816S rRNANitrospira spp.
Nsc825S-*-Nsc-0825-a-A-1816S rRNAbetaproteobacterial AOB
Nsr989S-S-Nsr-0989-a-A-1816S rRNANitrospira marina
Nsn227S-*-Nsn-0227-a-A-1816S rRNANitrospina gracilis
Ncc214S-S-Ncc-0214-a-A-1816S rRNANitrococcus mobilis
Flavo1004S-St-Iso8-1004-a-A-1816S rRNAFlavobacterium isolate 8
CLOBU1022S-S-Cl.bu.-1022-a-A-1816S rRNAClostridium butyricum, Elbe `river snowapos isolates 9.1, 9.2, 9.4
AERO1244S-G-Aero-1244-a-A-2116S rRNAAeromonadaceae
HGC23616S rRNAActinobacteria
Ppu646S-G-Ppu-0646-a-A-1816S rRNAPseudomonas spp.
AQUA841S-G-Aqua-0841-a-A-2116S rRNAgenus Aquabacterium
MYBM1171S-G-Mybm-1171-a-A-1816S rRNAgenus Methylobacterium
AcI-840-1 (AC840a)16S rRNASubgroup of acI lineage (Actinobacteria)
AcI-840-2 (AC840b)16S rRNASubgroup of acI lineage (Actinobacteria)
AcI-121416S rRNAacI lineage of limnic Actinobacteria
KO 01S-S-Thth-0068-a-A-1916S rRNAThermus thermophilus
KO 02S-G-Art1-1014-a-A-1916S rRNAArthrobacter sp.
KO 03S-G-Art2-1012-a-A-2016S rRNAArthrobacter sp.
KO 04S-G-Art3-1038-a-A-2116S rRNAArthrobacter sp
KO 05S-S-Agrtu-0136-a-A-2316S rRNAAgrobacterium tumefaciens
KO 06S-S-Agrtu-0133-a-A-2316S rRNAAgrobacterium tumefaciens
KO 07S-G-Thact-0623-a-A-2216S rRNAgenus Thermoactinomyces
KO 08S-G-Strp-1246-a-A-2116S rRNAgenus Streptomyces
KO 09S-G-Strth-0136-a-A-1916S rRNAgenus Streptomyces (S. thermonitrificans, S. thermogriseus, S. thermovulgaris)
KO 10S-S-Thmch-1437-a-A-2016S rRNAThermomonospora chromogena
KO 11S-S-Thmcu-0447-a-A-2216S rRNAThermomonospora curvata
KO 12S-S-Psae-0148-a-A-2216S rRNAMany Pseudomonas species
KO 201S-*-Aaacc-0644-a-A-1816S rRNAAcidovorax avenae subsp. avenae/cattleyae/citrulli
KO 202S-*-Aaacc-0443-a-A-1916S rRNAAcidovorax avenae avenae/cattleyae/citrulli
KO 203S-S-RPsBD-0069-a-A-1816S rRNARalstonia solanacearum, Pseudomonas syzygii
KO 204S-*-Xanth-0210-a-A-1816S rRNAXanthomonas translucens, X. albiineans, X. melonis, X. sacchari, X. hyacinthi, X. campestris
KO 205S-S-Azbr-1012-a-A-1916S rRNAAzospirillum brasilense, Roseomonas fauriae
KO 206S-S-Hrub-0460-a-A-2516S rRNAHerbaspirillum rubrisubalbica
KO 207S-S-Gdia-1012-a-A-1816S rRNAGluconacetobacter diazotrophicus
KO 208S-S-Gliq-0583-a-A-1816S rRNAGluconacetobacter liquefaciens
KO 209S-S-XfasB-0834-a-A-1916S rRNAXylella fastidiosa
KO 210S-S-XfastC-0078-a-A-2116S rRNAXylella fastidiosa
KO 211S-*-Psalc-0631-a-A-2116S rRNAPseudomonas alcaligenes, P. resinovorans
KO 212S-S-Eamya-0444-a-A-1816S rRNAErwinia amylovora
KO 213S-S-Eamyb-0445-a-A-1816S rRNAErwinia amylovora
KO 214S-*-Yenta-0443-a-A-1916S rRNAYersinia enterocolitica, Y. kristensenii
KO 215S-S-Yentb-0443-a-A-1916S rRNAYersinia enterocolitica
KO 216S-S-Stpy-0174-a-A-2116S rRNAStreptococcus pyogenes
KO 218S-S-Saur-0069-a-A-1916S rRNAStaphylococcus aureus, S. haemolyticus
KO 219S-*-HpylA-0162-a-A-2416S rRNAHelicobacter pylori, H. nemestrinae, H. cetorum, H. tursipssae, H. heilmanii
KO 221S-S-CfalA-0062-a-A-2016S rRNAClostridium fallax
KO 222S-S-CfalB-1443-a-A-1916S rRNAClostridium fallax
KO 223S-S-CtetA-0116-a-A-1916S rRNAClostridium tetani
KO 224S-S-CtetB-0746-a-A-1916S rRNAClostridium tetani
KO 225S-S-Cperf-0185-a-A-2016S rRNAClostridium perfringens
KO 226S-*-Cbut-0183-a-A-2116S rRNAClostridium butyricum, C. kainantoi
KO 227S-S-CdifC-1009-a-A-1916S rRNAClostridium difficle
KO 228S-*-AhydA-0466-a-A-2316S rRNAAeromonas hydrophila, A. Salmonicida
KO 229S-*-AhydB-0454-a-A-2116S rRNAAeromonas hydrophila, A. Salmonicida
KO 230S-*-Nmena-0454-a-A-2016S rRNANeisseria meningitidis, N.polysaccharea, N.lactima
KO 231S-*-Nmenb-0454-a-A-2016S rRNANeisseria meningitidis, N.polysaccharea, N.lactima
KO 232S-*-Vchol-0122-a-A-1816S rRNAVibrio cholerae, V. mimicus
KO 233S-S-Alwo-0574-a-A-1816S rRNAAcinetobacter lwoffii, Sphingobacterium
KO 235S-G-Strep-655-a-A-1916S rRNAgenus Streptococcus
DEN6716S rRNAMethanol-utilizing denitrifying cluster
DEN12416S rRNAAcetate-denitrifying cluster
DEN58116S rRNAAcetate-denitrifying cluster
CteAS-S-Cte-0462-a-A-2016S rRNAComamonas testosteroni
Nm143-446-116S rRNANitrosomonas sp. Nm143-related clones
Nm143-446-216S rRNANitrosomonas sp. Nm143-related clones
Nspmar6216S rRNANitrospira marina-related clones
Nmar83116S rRNANitrosomonas marina-related clones
DSS44916S rRNASome Desulfosarcina
DSS13816S rRNAFew Desulfobacteraceae
DSR125616S rRNAFew Desulfobulbaceae
Dblb124316S rRNADesulfobacterium catecholicum-related strains LacK1, LacK4 and LacK9
Dcap103116S rRNAFew Desulfocapsa including strain LacK10
Dblb103216S rRNADesulfobacterium catecholicum and related strains LacK1 and LacK9
Dsr18616S rRNADesulfobacterium catecholicum and related strains LacK1 and LacK9
DSV18516S rRNADesulfovibrio acrylicus
DSV44516S rRNADesulfovibrio strain EtOHK3
DSV6416S rRNADesulfovibrio strain EtOHK2
OcraDEL116S rRNADeltaproteobacterial symbiont 1 of Olavius crassitunicatus
OcraDEL216S rRNADeltaproteobacterial symbiont 2 of Olavius crassitunicatus
OcraDEL316S rRNADeltaproteobacterial symbiont 3 of Olavius crassitunicatus
DSBAC35716S rRNAMost Desulfobacteraceae and Syntrophobacteraceae
EPSY549S-C-eProt-0549-a-A-1816S rRNAEpsilonproteobacteria
EPSY914S-C-eProt-0914-a-A-1816S rRNAEpsilonproteobacteria
EPSY1384S-C-eProt-1384-a-A-1816S rRNAEpsilonproteobacteria
MB16S rRNAMethylobacterium
PS516S rRNAPseudomonas synxantha and related species of the Pseudomonas fluorescens subgroup
E1116S rRNAEubacteria
Nost993S-*-Nost-993-a-A-1816S rRNAFilamentous Alphaproteobacteria
PPx1002S-*-PPx-1002-a-A-1816S rRNAFilamentous Alphaproteobacteria
EU25-1238S-*-EU25-1238-a-A-2016S rRNAFilamentous Chloroflexi
CribseqS-S-Crib-0064-a-A-2016S rRNACriblamydia sequanensis
Usporo48916S rRNAa group of unclassified Clostridiales related to Sporobacter
DSV82716S rRNAmembers of the genus Desulfovibrio
DSBA101716S rRNADesulfobacca acetoxidans
Psc-52316S rRNAPiscichlamydia salmonis (and few other unrelated bacteria)
Psc-II16S rRNAPiscichlamydia salmonis
TG1-Rsd1716S rRNAspecific for phylotypes Rs-D17 amp RsTG1 in candidate phylum Termite Group 1
TG1-HsTG1-24816S rRNAspecific for phylotype HsTG1 in candidate phylum Termite Group 1
TG1-T-28716S rRNAmost members of subphylum 1 of candidate phylum Termite Group 1
TG1-HsTG3-19316S rRNAspecific for phylotype HsTG3 in candidate phylum Termite Group 1
TG1-RsD95-12316S rRNAspecific for phylotypes Rs-D95, RsDe11, RsDr18 in candidate phylum Termite Group 1
TG1-RsD43-6416S rRNAspecific for phylotypes Rs-D43, RsPgL2-11, RsPgO2-18 in candidate phylum Termite Group
TG1-GfMT-28716S rRNAspecific for phylotype GfMT5-8 in candidate phylum Termite Group 1
Pint649S-S-P.int-0649-a-A-1916S rRNAPrevotella intermedia
Pnig657S-S-P.nig-0657-a-A-1916S rRNAPrevotella nigrescens
Pden654S-S-P.den-0654-a-A-1916S rRNAPrevotella denticola
FUS664S-G-Fuso-0664-a-A-1916S rRNAmost Fusobacterium sp.
SAR92_62716S rRNASAR92 clade
TBD1419S-S-Tb.den-1419-a-A-1816S rRNAThiobacillus denitrificans
TBD121S-*-Tbdt-0121-a-A-1816S rRNAThiobacillus denitrificans and Thiobacillus thioparus
TMD131S-S-Tm.den-0131-a-A-1816S rRNAThiomicrospira denitrificans
RHGA702S-S-Nsgar-702-a-A-1816S rRNA“Candidatus Nitrososphaera gargensis”
Tbm1282S-G-Tbm-1282-a-A-1816S rRNA most of Thermoanaerobacterium sp.
Tbmthsacc184S-S-Tbmthsacc-0184-a-A-1816S rRNAThermoanaerobacterium thermosaccharolyticum
Ccs432S-G-Ccs-0432-a-A-1816S rRNAmost of Caldicellulosiruptor sp.
TG1End1023T116S rRNAEndomicrobia phylotypes ZnTc-1, HsTc-1, RsTG1
TG1End102716S rRNAMost Endomicrobia lineages
TG1-TriG1-Hsj16S rRNAEndomicrobia HsTc-1
TG1-Joe-Kf16S rRNAEndomicrobia phylotype KfJe-1
TG1-Dev-Nca16S rRNAEndomicrobia phylotype NcDv-1
Flg-Dine-Hsj18S rRNADinenympha sp. HsDnA
Flg-Tricho1-Hsj18S rRNATrichonympha sp. HsTcA
Flg-Euc-Hsj18S rRNAEucomonympha sp. HsEcA
Flg-Joe-Kfl18S rRNAJoenia sp. KfJeA of K. flavicollis
ACIDO22816S rRNAAcidobacteria subdivision 1
Bfu61316S rRNACandidatus “Brocadia fulgida”
Oilv/OcraGAM116S rRNAOlavius ilvae / O. crassitunicatus Gamma 1 symbiont
Oalg/OilvGAM316S rRNAOlavius algarvensis / O. ilvae Gamma 3 symbionts
OilvDEL116S rRNAOlavius ilvae Delta 1 symbiont
Oalg/OilvDEL316S rRNAOlavius algarvensis/ O. ilvae Delta 3 symbiont
OalgDEL416S rRNAOlavius algarvensis Delta 4 symbiont
SPIRO16S rRNAOlavius algarvensis / O. crassitunicatus /O. loisae spirochete symbionts
Beta116S rRNABetaproteobacteria
Beta216S rRNABetaproteobacteria
Beta316S rRNABetaproteobacteria
Beta416S rRNABetaproteobacteria
Burkho4A16S rRNAMost Burkholderia
Burkho4B16S rRNABurkholderia caribensis and B. caryophylli
Burkho4C16S rRNABurkholderia glathei and B. multivorans
Burkho4D16S rRNAMost Burkholderia
Mallei 216S rRNABurkholderia pseudomallei
Mallei 316S rRNABurkholderia pseudomallei
Pic116S rRNARalstonia pickettii
EUB34216S rRNAMost Bacteria
BKH116S rRNACandidatus Burkholderia kirkii
BKH216S rRNACandidatus Burkholderia kirkii, B. glathei, M2-K3
BKH316S rRNACandidatus Burkholderia kirkii
BKH416S rRNACandidatus Burkholderia kirkii, M2-K4, M2-K6
BKH516S rRNABurkholderia andropogonis
BKH616S rRNABurkholderia andropogonis
BKH716S rRNABurkholderia caryophylli
BKH816S rRNABurkholderia caryophylli
BKH916S rRNABurkholderia caryophylli
BKH1016S rRNABurkholderia caryophylli
BKH1116S rRNABurkholderia glathei, Burkholderia sp.
BKH1216S rRNABurkholderia glathei, Burkholderia sp.
BKH1316S rRNABurkholderia glathei, Burkholderia sp.
BKH1416S rRNABurkholderia glathei, Burkholderia sp.
BKH1516S rRNABurkholderia sorididicola
BKH1616S rRNABurkholderia sorididicola
BKH1716S rRNACandidatus Burkholderia nigropunctata
BKH1816S rRNACandidatus Burkholderia nigropunctata
BKH1916S rRNACandidatus Burkholderia nigropunctata
BKH2016S rRNACandidatus Burkholderia nigropunctata
BKH2116S rRNABurkholderia sp. AB119 (AF364859)
BKH2216S rRNABurkholderia sp.
BKH2316S rRNAUncultured soil bacterium
BKH2416S rRNABurkholderia terrae, B. hospita, Burkholderia sp.
BKH2516S rRNABurkholderia sp.
BKH2616S rRNABurkholderia phymatum STM815 (T) (AJ302312)
BKH2716S rRNABurkholderia phymatum STM815 (T) (AJ302312)
BKH2816S rRNABurkholderia kururiensis, B. brasilensis
BKH2916S rRNABurkholderia kururiensis, B. brasilensis
BKH3016S rRNABurkholderia sp.
BKH3116S rRNABurkholderia sp.
BKH3216S rRNABurkholderia ambifaria (T) (AF043302)
BKH3316S rRNABurkholderia ambifaria (T) (AF043302)
BKH3416S rRNABurkholderia mallei, B. pseudomallei
BKH3516S rRNABurkholderia mallei, B. pseudomallei
BKH3616S rRNABurkholderia mallei, B. pseudomallei
BKH3716S rRNABurkholderia pseudomallei, B. thailandensis
BKH3816S rRNABurkholderia ambifaria, B. anthina, B. cenocepacia, B. cepacia, B. multivorans, B. pyrrocinia, B. stabilis, B. ubonensis, B. vietnamiensis, Burkholderia sp.
BKH3916S rRNABurkholderia cenocepacia, B. cepacia, B. multivorans, B. pyrrocinia, B. tropica, B. unamae, B. vietnamiensis, Burkholderia sp., M1-K8, M1-K10, M1-K11, M1-K13, M1-K14, M2-K6, M2-K81
BKH4016S rRNABurkholderia mallei, B. pseudomallei
BKH4116S rRNABurkholderia pyrrocinia (T) (U96930)
BKH4216S rRNABurkholderia ambifaria, B. cepacia, B. pyrrocinia, B. stabilis, B. vietnamiensis, Burkholderia sp., M2-K5, M2-K9, M2-K11, M2-K13, M2-K72, M3-K3
BKH4316S rRNABurkholderia ambifaria, B. anthina, B. cenocepacia, B. cepacia, B. multivorans, B. pyrrocinia, B. ubonensis, B. vietnamiensis, Burkholderia sp.
BKH4516S rRNABurkholderia cenocepacia, B. cepacia, B. dolosa, B. multivorans, B. ubonensis, B. vietnamiensis, Burkholderia sp., Rhodocyclus tenuis DSM110 (D16209)
BKH4616S rRNABurkholderia gladioli, B. glumae, B. plantarii, Burkholderia sp.
BKH4716S rRNABurkholderia gladioli, B. glumae, B. plantarii, Burkholderia sp.
BKH4816S rRNABurkholderia andropogonis, B. glathei, B. plantarii, B. sordidicola Jm120 (DQ256491), B. tropica, Burkholderia sp., Candidatus Burkholderia nigropunctata, uncultured eubacterium WD263 (AJ292641), L1-K13,
BKH4916S rRNABurkholderia fungorum, Burkholderia sp., symbionts of Tetraponeri binghami and Asellus aquaticus
BKH5016S rRNABurkholderia phytofirmans amp Burkholderia sp. NAH1 (AF247815)
BKH5116S rRNABurkholderia fungorum, B. koreensis, B. phenazinium, B. phytofirmans, B. unamae, Burkholderia sp., symbionts of Tetraponeri binghami and Asellus aquaticus, uncultured eubacterium WD202 amp WD285 (AJ292637 amp AJ292644)
BKH5216S rRNABurkholderia xenovorans (T) (U86373)
BKH5316S rRNABurkholderia graminis, Burkholderia sp. 54 (AY238504)
BKH5416S rRNABurkholderia caryophylli, B. graminis, Burkholderia sp.
BKH5516S rRNABurkholderia terricola (T) (AY040362), Burkholderia sp.
BKH5616S rRNABurkholderia cepacia, B. phenoliruptrix (T) (AY435213), Burkholderia sp.
BKH5716S rRNABurkholderia cepacia, B. phenoliruptrix (T) (AY435213), Burkholderia sp.
BKH5816S rRNABurkholderia tuberum (T) (AJ302311), Burkholderia sp.
BKH5916S rRNABurkholderia tuberum (T) (AJ302311), Burkholderia sp., L19-K6, L19-K12, L19-K47, L20-K36
BKH6016S rRNABurkholderia koreensis, B. tuberum (T) (AJ302311), Burkholderia sp., Thauera sp. O (AJ277704)
BKH6116S rRNABurkholderia bryophila, B. megapolitana (T) (AM489502), B. phenazinium, Burkholderia sp., L1-K48, L19-K74, L20-K81, M1-K6, M1-K7, M1-K24, M2-K4, M2-K14, M3-K2, M3-K6
BKH6216S rRNABurkholderia phenazinium, Burkholderia sp.
BKH6316S rRNABurkholderia caribiensis, Burkholderia sp.
BKH6416S rRNABurkholderia caribiensis, Burkholderia sp.
BKH6516S rRNABurkholderia cepacia, Burkholderia sp.
BKH6616S rRNABurkholderia cepacia, Candidatus Burkholderia calva, Burkholderia sp.
BKH6716S rRNABurkholderia hospita, B. terrae, Burkholderia sp.
BKH6816S rRNABurkholderia phymatum (T) (AJ302312), B. hospita, B. terrae KMY01 (AB201284)
BKH6916S rRNABurkholderia tropica, Burkholderia sp.
BKH7016S rRNABurkholderia unamae
BKH7116S rRNABurkholderia brasilensis M130 (AJ238360), B. kururiensis, B. sacchari (T) (AF263278), Burkholderia sp.
BKH7216S rRNABurkholderia nodosa, B. sacchari (T) (AF263278), B. tropica, B. unamae, Burkholderia sp., L19-K13, L19-K15, L19-K20, L19-K39,
BKH7316S rRNAPandoraea norimbergensis
BKH7416S rRNAPandoraea norimbergensis
BKH7516S rRNAPandoraea apista, P. norimbergensis, P. pnomenusa, P. pulmonicola, P. sputorum, Pandoraea sp., Burkholderia sp.
BKH7616S rRNACandidatus Burkholderia calva (AY277697)
BKH7716S rRNACandidatus Burkholderia calva (AY277697)
BKH7816S rRNACandidatus Burkholderia calva (AY277697), Burkholderia cepacia (AY512825), Burkholderia sp.
BKH7916S rRNACandidatus Burkholderia calva (AY277697), Candidatus Burkholderia nigropunctata (AY277698), Burkholderia cepacia (AY512825), Burkholderia sp.
BKH8016S rRNACandidatus Burkholderia kirkii, Candidatus Burkholderia nigropunctata (AY277698), Burkholderia cepacia (AY512825), Burkholderia sp.
BKH8116S rRNAPandoraea sputorum (T) (AF139176), Pandoraea sp.
BKH8216S rRNAPandoraea pulmonica, Burkholderia sp., uncultured eubacterium WD285
BKH8316S rRNAPandoraea apista, Pandoraea sp., Burkholderia sp. JB1 (X92188)
BKH8416S rRNAPandoraea pnomenusa, P. pulmonicola, Pandoraea sp., Burkholderia sp. MN 182.2 (AJ313026)
BKH8516S rRNACandidatus Burkholderia calva (AY277697), Candidatus Burkholderia kirkii, Candidatus Burkholderia nigropunctata (AY277698), Burkholderia cepacia (AY512825), Burkholderia sp.
BKH8616S rRNABurkholderia bryophila 1S18 (T) (AM489499), B. glathei, Burkholderia sp., L1-K13, L2-K5, L19-K66, L19-K74, M2-K3, M2-K7, M2-K12, M3-K1, M3-K4, M3-K5, M3-K7, M3-K8, M3-K9, M3-K10, M3-K14, M3-K15
BKH8716S rRNABurkholderia andropogonis, Burkholderia sp.,
BKH8816S rRNABurkholderia caryophylli, Burkholderia sp.
BKH8916S rRNABurkholderia cenocepacia LMG 12615 (AF265235), B. cepacia, Burkholderia sp., M2-K6, M2-K81,
BKH9016S rRNABurkholderia ambifaria, B. cepacia, B. pyrrocinia, B. stabilis (T) (AF148554), B. vietnamiensis, Burkholderia sp., M2-K5, M2-K9, M2-K11, M2-K13, M2-K72, M3-K3
BKH9116S rRNABurkholderia cepacia, B. glathei, B. multivorans, Burkholderia sp.
BKH9216S rRNABurkholderia cenocepacia (T) (AF148556), B. cepacia, B. dolosa (T) (AF175314), B. multivorans, B. ubonensis (T) (AB030584), B. vietnamiensis, Burkholderia sp., Rhodocyclus tenuis DSM110 (D16209)
BKH9316S rRNABurkholderia gladioli, Burkholderia sp.
BKH9416S rRNABurkholderia fungorum, Burkholderia sp., symbionts of Tetraponeri binghami and Asellus aquaticus
BKH9516S rRNABurkholderia fungorum, Burkholderia sp., symbionts of Tetraponeri binghami and Asellus aquaticus
BKH9616S rRNABurkholderia bryophila 1S18 (T) (AM489499), B. caledonica (T) (AF215704), B. phenazinium, Burkholderia sp.
BKH9716S rRNABurkholderia pseudomallei C7532 amp C6756 (AJ616911 amp AJ616912)
BKH9816S rRNABurkholderia pseudomallei C7532 amp C6756 (AJ616911 amp AJ616912)
BKH9916S rRNABurkholderia cepacia (M22518)
BKH10016S rRNABurkholderia gladioli, Burkholderia sp.
BKH10116S rRNABurkholderia gladioli
BKH10216S rRNABeta proteobacterium A35-1 (AY049942)
BKH10316S rRNABurkholderia multivorans AU0127 (AY486372)
BKH10416S rRNAUncultured bacterium KRA30-09 (AY081989)
BKH10516S rRNAUncultured bacterium KRA30-09 (AY081989)
BKH10616S rRNAUncultured bacterium KRA30-09 (AY081989)
BKH10716S rRNAUncultured bacterium clone TM08 (AY838516)
BKH10816S rRNABurkholderia xenovorans LB400 (T) (U86373), Burkholderia sp., Ralstonia sp. 1263a (AB054961) amp Ralstonia sp. JMP134 (AF139729)
BKH10916S rRNABurkholderia bryophila 1S18 (T) (AM489499), B. caledonica (T) (AF215704), B. phenazinium, Burkholderia sp.
BKH11016S rRNABurkholderia sp. NAP1 (AF361021)
BKH11116S rRNABurkholderia sp. NAP1 (AF361021)
BKH11216S rRNABurkholderia sp. NAP1 (AF361021)
BKH11316S rRNABurkholderia plantarii (T) (U96932), uncultured bacterium clone GPT2b (AY706439)
BKH11416S rRNAuncultured bacterium clone GPT2b (AY706439) amp uncultured bacterium clone G1a (AY706424)
BKH11516S rRNABurkholderia sp. 418 (AY580068 amp AY520839)
BKH11616S rRNABurkholderia sp. UCT 29 (AY178062), Burkholderia sp. Cses4 (AY178063), L2-K30
BKH11716S rRNABurkholderia cepacia strain ATCC 55487 (AY741358), Burkholderia sp.
BKH11816S rRNABurkholderia sp.
BKH11916S rRNABurkholderia sp., L19-K2, L19-K31
BKH12016S rRNABurkholderia sp.
BKH12116S rRNABurkholderia sp. B6 (AJ605717)
BKH12216S rRNABurkholderia sp. B6 (AJ605717)
BKH12316S rRNABurkholderia sp. B6 (AJ605717)
BKH12416S rRNABurkholderia sp. B6 (AJ605717)
BKH12516S rRNABurkholderia sp. 14 (AY238506)
BKH12616S rRNABurkholderia terrae KMY01 amp KMY02 (AB201284 amp AB201285), Burkholderia sp.
BKH12716S rRNABurkholderia ferrariae FeGl01 (DQ514537), bacterium strains
BKH12816S rRNABurkholderia sp. BR3437 (AY773189), Burkholderia sp. BR3464 (AY773194)
BKH12916S rRNABurkholderia sp. BR3437 (AY773189), Burkholderia sp. BR3464 (AY773194)
BKH13016S rRNABurkholderia nodosa R-22632 amp R-25486 (AM284970 amp AM284972), Burkholderia sp. Br3461 (AY773192 amp AY533861), Burkholderia sp. BR3470 (AY773198), Burkholderia sp. IBRC204 (DQ381722)
BKH13116S rRNAUncultured bacterium clone 015B-A07 (AY662004), uncultured beta proteobacterium Elb271 (AJ421941), M3-K7
BKH13216S rRNAuncultured eubacterium WD2116 (AJ292648), uncultured eubacterium WD2114 (AJ292647), L19-K36
Bnix-6416S rRNACandidatus Endonucleobacter bathymodioli
Bnix-64316S rRNACandidatus Endonucleobacter bathymodioli
Bnix-124916S rRNACandidatus Endonucleobacter bathymodioli
tios_434S-G-Tios-0434-a-A-2016S rRNAcluster TIOS44
HHY-T5S-*-Hhy-T5-654-a-A-1816S rRNAClone T5, micromanipulated from sludge
HHY-654S-*-Hhy-654-a-A-1816S rRNAseveral Haliscomenobacter species among others the type strain and an isolate named Plant1 Iso10B
DDK1216S rRNATreponema sp. DDKL-12
DDK2016S rRNATreponema sp. DDKL-20
hspec92516S rRNACandidatus Paraholospora nucleivisitans
Rs-N31-197S-S-RsN31-0197-a-A-1816S rRNAspecific for phylotype Rs-N31 (e.g. Can. Desulfovibrio trichonymphae)
ZnDsv-02-471S-S-ZnDv2-0471-a-A-1816S rRNAspecific for phylotype ZnDsv-02 in genus Desulfovibrio
SUL90S-*-Sul-0090-a-A-1816S rRNASubgroup of Epsilonproteobacteria (Uncultured Helicobacteraceae, Clone GD17b, Clone GD17a)
Symco216S rRNAendosymbiont of Codakia orbicularis
GNS93416S rRNAChloroflexi sponge cluster I
POR113016S rRNACandidate phylum “Poribacteria”
POR38916S rRNACandidate phylum “Poribacteria”
POR60016S rRNACandidate phylum “Poribacteria”
DSV11916S rRNADesulfovibrio strain L3
DSV13916S rRNADesulfovibrio strain L7
APC98718S rRNAnovel eukaryotic phyla, APC
HLB107418S rRNAHeterolobosea
VAH104418S rRNAVahlkampfiidae
NAE104118S rRNANaegleria spp.
Ccat26S rRNACandida catenulata
Cint26S rRNACandida intermedia
Geo26S rRNAGeotrichum sp.
Ylip26S rRNAYarrowia lipolytica
DF198S-*Bact-0198-a-A-2016S rRNADefluviicoccus related organisms, cluster III
DF1004S-*-Bact-1004-a-A-1816S rRNADefluviicoccus related organisms, some cluster III
DF1013S-*Bact-0198-a-A-2016S rRNADefluviicoccus related organisms. some cluster III
DF181AS-*-Bact-0181-a-A-2016S rRNADefluviicoccus vanus related organisms, some cluster IV
DF181BS-*-Bact-0181-b-A-1816S rRNADefluviicoccus related organisms, some cluster IV
Ana_434S-G-Bact-0434-a-A-2116S rRNACandidatus Anadelfobacter veles
Cyrt_1438S-G-Cyrt-1438-a-A-1816S rRNACandidatus Cyrtobacter comes
EUB338_VS-D-Bact-0338-a-A-1816S rRNACandidatus Cyrtobacter comes some Chloroflexi some Firmicutes some Proteobacteria
LS_HOL189L-P-Acido-0189-a-A-1823S rRNAAcidobacteria
SS_HOL1400S-P-Acido-1400-a-A-1716S rRNAAcidobacteria
LS_ALP544L-*-kan1–0544-a-A-1823S rRNALS_LKC21_kan1
LS_ALP761L-*-Sub7–0761-a-A-1823S rRNAParts of Acidobacterial subgroup 7 (including LS_LKC21_kan1, DON29, DON30, DON31)
SS_subd7_UB55–585S-*-Sub7–0585-a-A-1816S rRNAClone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1
SS_subd7_UB55–632S-*-Sub7–0632-a-A-1816S rRNAClone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1
LS_subd8_SGB1223L-*-Sub8–1223-a-A-1823S rRNAAcidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5 (LS_LKC11_kan6), clone ZC6, G. fermentans, H. foetida
LS_subd8_SGB1420L-*-Sub8-1420-a-A-1823S rRNAAcidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5, LS_LKC11_kan6, clone ZC6, G. fermentans, H. foetida,
LS_GFER2787L-*-Gfer-2787-a-A-1823S rRNAG. fermentans and relatives (no LKC clones)
Bru-99616S rRNABrucella spp.
S-S-T.int-0442-a-A-1816S rRNAThiomonas intermedia
S-S-T.plum-450-a-A-1816S rRNAThiobacillus plumbophilus
S-S-H.neap-635-a-A-1916S rRNAHalothiobacillus neapolitanus
RB45416S rRNAPirellula sp. strain SH1
PIR122316S rRNAGenus Pirellula
ALF682S-Sc-aProt-0682-a-A-1816S rRNAAlphaproteobacteria from sludge anaerobic digesters
YDC6916S rRNAuncultivated magnetotactic cocci (Candidatus Magnetococcus yuandaducum)
L2CG35323S rRNALeptospirillum ferriphilum 5-way CG
L2UBA35323S rRNALeptospirillum rubarum UBA
BDE52516S rRNAGenus Bdellovibrio
Aceto216S rRNAAcetobacteraceae (excepted Acidiphilium, Acidocella, Acidisphaera, Paracraurococcus, Crauroccocus, Roseococcus)
Aceto3A16S rRNASome Acetobacteraceae
Aceto3B16S rRNAAcetobacteraceae
Ace216S rRNAAcetobacter
Acidomonas216S rRNAAcidomonas methanolica
Aceti116S rRNAAcetobacter aceti
Asia216S rRNAAsaia
Acidocella116S rRNAAcidocella/Acidiphilium
Afipia216S rRNAAfipia
ACD84016S rRNAAcidiphilium
Acdp82116S rRNAAcidiphilium
Oxy116S rRNAGluconobacter oxydans
Diaz416S rRNAGluconacetobacter diazotrophicus
Gludi16S rRNAGluconacetobacter diazotrophicus
Sac116S rRNAGluconacetobacter sacchari
Ruber216S rRNAPacraurococcus ruber
Glob216S rRNARhodopila globiformis
Bra116S rRNAAzospirillum brasilense et rel. cluster
Lipo116S rRNAAzospirillum lipoferum, A. doebereinerae and A. largomobile
Rub116S rRNARhodospirillum rubrum
Rub216S rRNARhodospirillum rubrum
Orienta316S rRNAOrientia
Orienta516S rRNAOrientia
Hypho316S rRNAHyphomonas
Mari116S rRNAMaricaulis
Para116S rRNAParacoccus
Undic216S rRNAAllorhizobium unidicola
Sphingo416S rRNAMost Sphingomonadaceae
Sub116S rRNASphingomonas subartica
Cap116S rRNASphingomonas capsulata
Caulo1A16S rRNASome Caulobacteraceae
Caulo1B16S rRNAMost Caulobacteraceae
Caulo216S rRNACaulobacteraceae
Caubact116S rRNACaulobacter
Asti116S rRNAAsticcacaulis
Bre116S rRNABrevundimonas
Rzbc124716S rRNARhizobiaceae, Brucellaceae, Bartonella, Phyllobacteriaceae, Blastochloris, Azospirillum irakense and A. amazonense
Rzbc82016S rRNARhizobiaceae, Brucella and Bartonella
AgroAT41m16S rRNAAgrobacterium (Biovar 1 and A. rubi)
AgrRubi16S rRNAAgrobacterium rubi
Vit216S rRNAAgrobacterium vitis
C58-100716S rRNAAgrobacterium (G2, G6, G7, G8, G9)
AgrLarry16S rRNAAgrobacterium larrymoorei
AF310-101016S rRNAAgrobacterium larrymoorei
Rhizo1A16S rRNASome Rhizobium
Rhizo1B16S rRNASome Rhizobium
Gal16S rRNARhizobium galegae
Galli116S rRNARhizobium gallicum
Rhihain16S rRNARhizobium hainanensis
Sino216S rRNAMost Sinorhizobium
Xinji16S rRNASinorhizobium xinjiangensis
Kummero216S rRNASinorhizobium kummerowiae
Adh16S rRNAEnsifer adhaerens and few Sinorhizobium
Barto116S rRNAMost Bartonella
Bruce3B16S rRNAOchrobactrum
Ochro216S rRNAOchrobactrum
Ochro316S rRNAOchrobactrum
Phyllobact16S rRNAMesorhizobium/Rhizobium
Msrhuak16S rRNAMesorhizobium huakuii
Methylocyst116S rRNAMost Methylocystaceae
Methy516S rRNAMethylocystis and Methylosinus
Methy716S rRNAMethylocystis and Methylosinus
Nitrobacte16S rRNABradyrhizobiaceae (mostly Nitrobacter)
Rhodopseud16S rRNARhodopseudomonas
Elk116S rRNABradyrhizobium elkanii cluster
Nitro116S rRNANitrobacter
Blastobact16S rRNABlastobacter denitrificans
Hypho516S rRNASome Hyphomicrobium
Blastochlo616S rRNABlastochloris and Ochrobactrum
Pedo216S rRNAPedomicrobium
Cau216S rRNAAzorhizobium caulinodans
Methylobact216S rRNAMethylobacterium
BET94016S rRNABetaproteobacteria (excepted Comamonadaceae, Nitrosomonadaceae and Methylophilaceae)
Beta216S rRNABetaproteobacteria
Beta316S rRNABetaproteobacteria
Burcep16S rRNASome Burkholderia (B. cepacia, B. mallei, B. pseudomallei, B. vietnamiensis, B. thailandensis, B. pyrrocinia) and some Herbaspirillum
Bkhglum16S rRNABurkholderia glumae
Bkhgram116S rRNABurkholderia graminis
Bkhgram216S rRNABurkholderia graminis
Bkhvand16S rRNABurkholderia plantarii
Thau216S rRNAThauera
Ni216S rRNANitrosomonas
Nitcom2b16S rRNANitrosomonas communis
Nitcryo116S rRNANitrosomonas cryotolerans
Nitcryo216S rRNANitrosomonas cryotolerans
Nithalo116S rRNANitrosomonas halophila
Nithalo216S rRNANitrosomonas halophila
Nitmar216S rRNANitrosomonas marina
Comtes216S rRNAComamonas (mainly C. testosteroni)
RhizoLCSA116S rRNAMaize rhizosphere clones affiliated to Variovorax, Aquabacterium and Sphingomonas
Alca1b16S rRNAAlcaligenaceae
Eikcor116S rRNAEikenella corrodens
Methphi516S rRNAMethylophilus cluster
Car116S rRNACarsonella ruddii
ACT465a16S rRNAAcidithiobacillus
Thio216S rRNAAcidithiobacillus
Mor116S rRNAMoraxella
Psy116S rRNAPsychrobacter
marino16S rRNAMarinospirillum
Ocea116S rRNAOceanospirillum
Ocea216S rRNAOceanospirillum
Methy1A16S rRNASome Methylomonas
Methy1B16S rRNASome Methylomonas
Methmo616S rRNAMethylomonas cluster
Met116S rRNAMethylomicrobium
Methmi316S rRNAMethylomicrobium cluster
Ecoli1b16S rRNAEscherichia/Citrobacter/Salmonella/Shigella cluster
Bren216S rRNABrenneria
Buch116S rRNABuchnera aphidicola
Ewin116S rRNAEwingella
Kleb116S rRNAKlebsiella oxytoca
Rah116S rRNARahnella
Ser116S rRNASerratia
Yer116S rRNAYersinia
Cardio116S rRNACardiobacterium
Cyclo516S rRNACycloclasticus
Fran16S rRNAFrancisella
PseuAlc316S rRNAPseudomonas alcaligenes
Pseu1116S rRNAPseudomonas putida complex and P. stutzeri complex
Pseu1916S rRNAPseudomonas putida complex
Pseu2416S rRNAPseudomonas putida copmlex
Pseu1216S rRNAPseudomonas stutzeri complex
Pseu1516S rRNAPseudomonas stutzeri complex
PseuStu116S rRNAPseudomonas stutzeri complex
Pseu3316S rRNAPseudomonas citronellolis and Pseudomonas nitroreducens
PseuTol16S rRNAPseudomonas tolaasii
PseuSV516S rRNAPseudomonas sp. SV5, Ant9 and IpA-93
PseuBC4-616S rRNAPseudomonas corrugata
PseuISO1-216S rRNAPseudomonas sp. ISO1
PseuSag116S rRNAPseudomonas sp. Sag-1 and Iqa-1
Pseu3416S rRNAPseudomonas fragi cluster and Pseudomonas FAIR cluster
Pseu3516S rRNAPseudomonas LAB-26 cluster
Pseu3616S rRNAPseudomonas LAB-26 cluster
NmV16S rRNANitrosococcus mobilis
Nitmob16S rRNANitrosococcus mobilis
Allo116S rRNAAllochromatium
Allo416S rRNAAllochromatium
Chrom116S rRNAChromatium
Thio3H16S rRNAThiocapsa
Thiocys216S rRNAThiocystis
alter116S rRNAAlteromonas
alter216S rRNAAlteromonas
psalter116S rRNAPseudoalteromonas
psalter216S rRNAPseudoalteromonas
Xancam16S rRNAXanthomonas campestris
Lysant16S rRNALysobacter antibioticus
Geo1A16S rRNASome Geobacter
Geo1B16S rRNAGeobacter
DVLVT222f16S rRNADesulfovibrio
DVGL228e16S rRNADesulfovibrio
Ep116S rRNAUncultured Epsilonproteobacteria affiliated to Nautiliaceae
Epsi116S rRNAUncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira
Epsi316S rRNAUncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira
Alvi216S rRNAUnidentified Epsilonproteobacteria affiliated to Alvinella
Alvi316S rRNAUnidentified Epsilonproteobacteria affiliated to Alvinella
Alvi416S rRNAUnidentified Epsilonproteobacteria affiliated to Alvinella
Alvi516S rRNAUnidentified Epsilonproteobacteria affiliated to Alvinella
Arco116S rRNAArcobacter cibarius and uncultured Arcobacter
Arco216S rRNAUnidentified Epsilonproteobacteria affiliated to Arcobacter
Sulfu116S rRNASulfurospirillum
Sulfu316S rRNASome Sulfurospirillum and uncultured Sulfurospirillum
Heli216S rRNASome Helicobacter and Wolinella succinogenes
Heli416S rRNASome Helicobacter
Heli516S rRNASome Helicobacter
Heli616S rRNASome Helicobacter
HeliFel116S rRNAHelicobacter heilmanni cluster (including H. felis)
HeliMur116S rRNAHelicobacter muridarum
HeliPull116S rRNASome Helicobacter
HelPull316S rRNASome Helicobacter
HeliPyl216S rRNAHelicobacter pylori
HeliPyl316S rRNAHelicobacter pylori
Wolin216S rRNAWolinella succinogenes
Anab116S rRNAAnabaena
nostoc316S rRNANostoc
Calo116S rRNACalothrix
Calo216S rRNACalothrix
cylindro216S rRNACylindrospermopsis
cylindro316S rRNACylindrospermopsis
gloe216S rRNAChlorogloeopsis
lyng216S rRNALyngbya
micys116S rRNAMicrocystis
micys216S rRNAMicrocystis
micys316S rRNAMicrocystis
oscil116S rRNAPlanktothrix
phor216S rRNAPhormidium
pleur116S rRNAPleurocapsa
pleur216S rRNAPleurocapsa
pleur316S rRNAPleurocapsa
prochlo116S rRNAProchlorothrix
prochlo216S rRNAProchlorothrix
Systic216S rRNASynechocystic
thia116S rRNAThialhalivibrio
tricho216S rRNATrichodesmium
tricho316S rRNATrichodesmium
chlorob116S rRNAChlorobium
Bacil1616S rRNABacillus
Bacil6016S rRNABacillus sphaericus
Bacsub216S rRNABacillus subtilis et rel. cluster
Bacmega116S rRNABacillus megaterium
BaCoa116S rRNABacillus coagulans cluster
Paeni4-216S rRNAPaenibacillus popolliae et rel. cluster (including P. lentimorbus, P. thyaminolyticus)
Paeni1-216S rRNAPaenibacillus naphthalenovorans
Paeni7-216S rRNAPaenibacillus azotofixans
Paeni7-316S rRNAPaenibacillus azotofixans
Paeni5-216S rRNAPaenibacillus polymyxa
Lacto116S rRNALactobacillus fermentum
Lacto1016S rRNALactobacillus brevis
Lacto1516S rRNALactobacillus
Lacto2616S rRNALactobacillus plantarum
Lacto3916S rRNALactobacillus
Lacto4116S rRNALactobacillus acidophilus
Lacto4216S rRNALactobacillus delbrueckii
Lacto6016S rRNALactobacillus acidophilus
Lacto6116S rRNALactobacillus plantarum
Lacto7316S rRNALactobacillus casei
Lacto8716S rRNALactobacillus alimentarius
Lacto9016S rRNALactobacillus salivarius
Lacto10816S rRNALactobacillus perolens
Lacto9916S rRNALactobacillus perolens
Enter216S rRNAEnterococcus
Lactococcus416S rRNALactococcus
Strepto116S rRNAStreptococcus
Strepto1016S rRNAStreptococcus
Strepto1916S rRNAStreptococcus
Strepto2716S rRNAStreptococcus
Tab99316S rRNAThermoanaerobacter
buty116S rRNAButyrivibrio
Sele116S rRNASelenomonas
Sele416S rRNASelenomonas
Sele1316S rRNASelenomonas
Sporo216S rRNASporomusa
Acida216S rRNAAcidaminococcus
Acida416S rRNAAcidaminococcus
Diali316S rRNADialister
Diali516S rRNADialister
Diali1416S rRNADialister
Mega216S rRNAMegasphaera
Mega416S rRNAMegasphaera
Mega816S rRNAMegasphaera
Mega1116S rRNAMegasphaera
Phasco416S rRNAPhascolarctobacterium
Phasco816S rRNAPhascolarctobacterium
Eubac316S rRNAEubacterium
Eubac416S rRNAEubacterium
Mogi116S rRNAMogibacterium
Mogi1216S rRNAMogibacterium
Myco1116S rRNAMycoplasma
Myco216S rRNAMycoplasma
Myco4316S rRNAMycoplasma
Myco5716S rRNAMycoplasma
Myco8116S rRNAMycoplasma felis
Spiroplas216S rRNASpiroplasma
Spiroplas416S rRNASpiroplasma
Spiroplas1516S rRNASpiroplasma
Achol316S rRNAAcholeplasma
Plancto116S rRNARhodopirrellula cluster
Plancto1616S rRNASome Pirrellula
Plancto1716S rRNASome Pirrellula
Plancto1016S rRNASome Pirrellula
Plancto1316S rRNAUncultured anoxic bacteria affiliated to candidatus Kuenenia
Plancto1416S rRNAUncultured anoxic bacteria affiliated to candidatus Kuenenia
Plancto1516S rRNAUncultured anoxic bacteria affiliated to candidatus Kuenenia
Plancto916S rRNAGemmata cluster
Plancto1216S rRNAGemmata cluster
Verru416S rRNASome Verrucomicrobia affiliated to Prosthecobacter
Prevo316S rRNAPrevotella
Bacte716S rRNABacteroides
Rik616S rRNARikenella
Porp1516S rRNAPorphyromonas
Dysg316S rRNADysgonomonas
Flavo216S rRNAFlavobacterium columnare
Berg316S rRNABergeyella
Ornit316S rRNAOrnithobacterium
Ornit716S rRNAOrnithobacterium
Psyf1516S rRNAPsychroflexus
Psys216S rRNAPsychroserpens
Chrys216S rRNAChryseobacterium
Blatta116S rRNABlattabacterium
Blatta216S rRNABlattabacterium
Sapro116S rRNASaprospiraceae
Sapro216S rRNASaprospiraceae
Cyclo116S rRNACyclobacterium
Hyme316S rRNAHymenobacter
Hyme1616S rRNAHymenobacter
Micro216S rRNAMicroscilla
Micro1416S rRNAMicroscilla
Run416S rRNARunella
Spiro516S rRNASpirosoma
Spiro716S rRNASpirosoma
Spiro1016S rRNASpirosoma
Rhodo316S rRNARhodothermus
MPA6016S rRNAMicrothrix parvicella
Actino416S rRNARubrobacter
Arthro-clustB316S rRNAArthrobacter
StreptomycesA616S rRNAStreptomyces
StreptomycesB316S rRNAStreptomyces
StreptomycesC716S rRNAStreptomyces
StreptomycesC1716S rRNAStreptomyces
StreptomycesD716S rRNAStreptomyces
Corybo116S rRNACorynebacterium bovis
Corybo216S rRNACorynebacterium bovis
Coryglu116S rRNACorynebacterium glutamicum cluster
Coryjei116S rRNACorynebacterium jeikeium cluster
CoryVar116S rRNACorynebacterium variabilis
Coryxer116S rRNACorynebacterium xerosis
Coryxer216S rRNACorynebacterium xerosis
Noc116S rRNANocardia cluster
Noc216S rRNANocardia cluster
NocAfri116S rRNANocardia africana
NocBra116S rRNANocardia pseudobrasiliensis cluster
NocBra216S rRNANocardia pseudobrasiliensis cluster
Agroco516S rRNAAgrococcus
Agro-clustA316S rRNAAgromyces
CurtoA116S rRNACurtobacterium
Frigori216S rRNAFrigoribacterium
MicrobacA116S rRNAMicrobacterium
MicrobacB416S rRNAMicrobacterium
NocardioA516S rRNANocardioides
NocardioB216S rRNANocardioides
Propio116S rRNAPropionibacterium
ActiA416S rRNAActinomyces
ActiB416S rRNAActinomyces
ActiC416S rRNAActinomyces
ActiC516S rRNAActinomyces
ActiD216S rRNAActinomyces
Actiba116S rRNAActinobaculum
Actiba316S rRNAActinobaculum
Actino116S rRNAStreptosporangineae
Thermobifida116S rRNAThermobifida
Nocardio116S rRNASome Nocardiopsis and some Streptomonospora
Nocardio316S rRNASome Nocardiopsis, some Streptomonospora and some Prauseria
ThermonoA1816S rRNAThermomonospora
ThermonoA816S rRNAThermomonospora
ThermonoB116S rRNAThermomonospora
ThermonoB316S rRNAThermomonospora
Spha516S rRNASphaerobacter
Denitro616S rRNADenitrobacterium
Collin2916S rRNACollinsella
Collin4316S rRNACollinsella
Got62516S rRNAGeotoga
Pet45416S rRNAPetrotoga
AcidUnc16S rRNAUncultured Acidobacteria (Acidobacteria_6 cluster)
AcidoUnc316S rRNAUncultured Acidobacteria (Acidobacteria_4 cluster)
GeoHolo216S rRNAGeothrix and Holophaga (Acidobacteria_8 cluster)
RhizoLCSA216S rRNAMaize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster)
RhizoLCSA316S rRNAMaize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster)
RhizoLCSA416S rRNAMaize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster)
RhizoLCSA616S rRNAMaize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_6 cluster)
Chlam16S rRNAChlamydiaceae
OP11-216S rRNAUncultured eubacteria WCHB1 (OP11 division)
OP11-316S rRNAUncultured eubacteria (OP11 division)
OP11-416S rRNAUncultured eubacteria (OP11 division)
OP11-516S rRNAUncultured eubacteria WCHB1 (OP11 division)
GeoVib116S rRNAGeovibrio and Denitrovibrio
Flex316S rRNAMucispirillum
Flex516S rRNAMucispirillum
Flex616S rRNAMucispirillum
OP2_116S rRNACandidate phylum OP2
Chloroplast16S rRNAChloroplasts
Muco16S rRNAMucorales
ActORD116S rRNAActinomycetales
KocTr416S rRNAKocuria
Nestk316S rRNANesterenkonia
Sporich816S rRNASporichthya
Modb216S rRNAModestobacter
Msph116S rRNANakamurella (previously Microsphaera)
Strmyc1316S rRNAStreptomyces
Strmyc1516S rRNAStreptomyces
Strmyc1616S rRNAStreptomyces
Strmyc2716S rRNAStreptomyces
Strmyc2816S rRNAStreptomyces
Strmyc3116S rRNAStreptomyces
StspSUB116S rRNAStreptosporanginae
StspSUB316S rRNAStreptosporanginae
CornbaSUB116S rRNACorynebacterineae
Wilm116S rRNAWilliamsia
Tsuka116S rRNATsukamurella
Tsuka216S rRNATsukamurella
Rhococ316S rRNARhodococcus
Mycoba116S rRNAMycobacterium
Mycoba216S rRNAMycobacterium
Mycoba316S rRNAMycobacterium
Mycoba416S rRNAMycobacterium
Nocrd616S rRNANocardia
Nocrd816S rRNANocardia
Sacchms516S rRNASaccharomonospora
Sacchms716S rRNASaccharomonospora
Sacchms816S rRNASaccharomonospora/Saccharopolyspora
Sacchms916S rRNASaccharomonospora/Saccharopolyspora
Sacchps816S rRNASaccharopolyspora
Thebs216S rRNAThermobispora
Thebs416S rRNAThermobispora
Thercr116S rRNAThermocrispum
Thercr216S rRNAThermocrispum
Saccht816S rRNASaccarothrix
Saccht916S rRNASaccarothrix
Leifs516S rRNAMicrobacteriaceae
Leifs616S rRNAMicrobacteriaceae
Leifs216S rRNALeifsonia
Agroc116S rRNAAgrococcus
Agroc416S rRNAAgrococcus
Subte116S rRNASubtercola, Agreia
Micba1016S rRNAMicrobacterium
Micba1416S rRNAMicrobacterium
Micba416S rRNAMicrobacterium
Micba516S rRNAMicrobacterium
Clavb316S rRNAClavibacter
Cryob1116S rRNACryobacterium
Cryob1216S rRNACryobacterium
Cryob1316S rRNACryobacterium
Cryob316S rRNACryobacterium
Cryob516S rRNACryobacterium
Curtb116S rRNACurtobacterium
Curtb316S rRNACurtobacterium
Jons416S rRNAJonesia
Aplan616S rRNAActinoplanes
Asan116S rRNAAsanoa
Asan316S rRNAAsanoa
Cate116S rRNACatenuloplanes
Dacty216S rRNADactylosporangium
Dacty316S rRNADactylosporangium
Solw316S rRNASolwaraspora
Nocadio116S rRNANocardioides
Nocadio1416S rRNANocardioides
Nocadio1616S rRNANocardioides
Nocadio1816S rRNANocardioides
Nocadio316S rRNANocardioides
Nocadio816S rRNANocardioides
Krib116S rRNAKribella
Hong216S rRNAHongia
Amytop516S rRNAAmycolatopsis
Amytop616S rRNAAmycolatopsis
Prausl216S rRNAPrauserella
Pseno416S rRNAPseudonocardia
Pseno516S rRNAPseudonocardia
Propb316S rRNAPropionibacterium
Propb716S rRNAPropionibacterium
Propb816S rRNAPropionibacterium
Miclun116S rRNAMicrolunatus
Tess316S rRNATessaracoccus
Mob316S rRNAMobiluncus
Mob416S rRNAMobiluncus
Mibisp116S rRNAMicrobispora
Mibisp216S rRNAMicrobispora
Mitesp116S rRNAMicrotetraspora
Mitesp216S rRNAMicrotetraspora
Tetsp216S rRNATetrasphaera
Acm316S rRNAActinomadura
Acm616S rRNAActinomadura
Nocps316S rRNANocardiopsis
DermbFAM116S rRNADermabacteraceae
DermbFAM216S rRNADermabacteraceae
Bracb216S rRNABrachybacterium
Dermb116S rRNADermabacter
Brev316S rRNABrevibacterium
Brev416S rRNABrevibacterium
Brev516S rRNABrevibacterium
Brevi216S rRNABrevibacterium
Brevi316S rRNABrevibacterium
Roth116S rRNARothia
Roth216S rRNARothia
Celm416S rRNACellulomonas
Celm516S rRNACellulomonas
Celum116S rRNACellulosimicrobium
Prom216S rRNAPromicromonospora
Crysp216S rRNACryptosporangium
Glyc316S rRNAGlycomyces
Glyc416S rRNAGlycomyces
Gord216S rRNAGordonia
Gord316S rRNAGordonia
Gord616S rRNAGordonia
Gord716S rRNAGordonia
Aci116S rRNAAcidiphillium
Aci216S rRNAAcidiphillium/Acidocella
Liq116S rRNAGluconacetobacter liquefaciens
Inteur116S rRNAGluconacetobacter intermedius and Gluconacetobacter europaeus
Azo116S rRNAAzospirillum (excepted A. irakense and A. amazonense), some Roseomonas spp., some Rhodospirillum spp., some Rhodocista spp., some Skermanella spp.
Azo516S rRNAAzospirillum (excepted A. irakense and A. amazonense), some Roseomonas spp., some Rhodospirillum spp., some Rhodocista spp., some Skermanella spp.
Ira116S rRNAAzospirillum irakense and Rhodocista sp. AR2107 and AT2107
Ira316S rRNAAzospirillum irakense
Ama216S rRNAAzospirillum amazonense
Rhodo216S rRNARhodospirillum
Pha16S rRNAPhaeospirillum
Rho116S rRNARhodocista
Rho216S rRNARhodocista
Wol316S rRNAWolbachia
Wol416S rRNAWolbachia
Ehrli116S rRNAEhrlichiaceae (excepted Ehrlichia risticii and Cowdria)
Cow116S rRNACowdria
Holo116S rRNAHolospora
Caedi116S rRNACaedibacter
Rhodobact1B16S rRNARhodobacteraceae (excepted Paracoccus, Amaricoccus, Rhodobacter and Rhodovulum)
Rhodovo1A16S rRNARhodovolum
Sphingo5A16S rRNAMost Sphingomonadaceae
Sphingo5B16S rRNAMost Sphingomonadaceae
Rhi16S rRNARhizobiaceae (excepted Agrobacterium)
Rhizo15716S rRNARhizobiaceae (excepted Agrobacterium), Bradyrhizobiaceae, Brucellaceae and Brevundimonas
Agro15716S rRNAAgrobacterium (Biovar 1, 2 and 3)
B6-12816S rRNAAgrobacterium (Genomic species G2, G3, G4, G7 and G9)
C58-12816S rRNAAgrobacterium (G6, G8 and some A. rubi)
TT111-12816S rRNAAgrobacterium (G1)
AF310-12816S rRNAAgrobacterium larrymoorei, some Sulfitobacter, and some Roseobacter
Arub12816S rRNASome Agrobacterium rubi
Avit12816S rRNAAgrobacterium vitis
B6-43716S rRNAAgrobacterium (G1, G3, G4, G7, some A. rubi and most Rhizobium)
B6-60316S rRNAAgrobacterium (G1, G3, G4, G7), A. rubi, A. larrymoorei, some Rhizobium and some Brevundimonas
C58-60416S rRNAAgrobacterium (G2, G6, G8, G9, A. vitis and Rhodococcus)
Rhizo1-216S rRNAMost Rhizobium
Rgal12816S rRNARhizobium galegae
Rgal15716S rRNASome Rhizobium, Mesorhizobium, Phyllobacterium, Methylobacterium, Acetobacter, Gluconacetobacter, Rhodospirillacae
Barto216S rRNABartonella
Amino116S rRNAAminobacter
Meso116S rRNAMesorhizobium
Brady416S rRNABradyrhizobiaceae
Brady6A16S rRNAMost Bradyrhizobium and Afipia
Brady6B16S rRNABradyrhizobium elkanii cluster
Hypho116S rRNASome Hyphomicrobium
Hypho216S rRNASome Hyphomicrobium
Ancy116S rRNAAncylobacter
Blast116S rRNABlastochloris
Xan16S rRNAXanthobacter
Methylo116S rRNAMethylobacterium
Burkho4A16S rRNAMost Burkholderia
Burkho4B16S rRNASome Burkholderia (B. hospita, B. cepacia, B. caribensis, B. caryophylli, B. mallei, B. pseudomallei, B. pyrrocinia, B. ambifaria, B. gladioli, B. glumae)
Burkho4C16S rRNASome Burkholderia (B. glathei, B. andropogonis, B. cepacia, B. multivorans)
Mallei216S rRNABurkholderia pseudomallei and B. thailandensis
Mallei316S rRNABurkholderia pseudomallei and B. mallei
Dechlo216S rRNADechloromonas
Arcus116S rRNAAzoarcus
Arcus216S rRNAAzoarcus
Nit1A16S rRNAMost Nitrosospira
Nit1B16S rRNAMost Nitrosospira
Nit1C16S rRNASome Nitrosospira
Herb116S rRNAHerbaspirillum
Oxa216S rRNAOxalobacter formigenes
Var116S rRNAVariovorax
Pic116S rRNARalstonia pickettii
Achro116S rRNAAchromatium
Pho116S rRNAPhotorhabdus
Pro1A16S rRNAProteus
Pro1B16S rRNAProteus
Verru316S rRNAMost Verrucomicrobia
Actino316S rRNAFrankia
Fibrobacter16S rRNAFibrobacteres
Acido-a16S rRNAUncultured Acidobacteria (Acidobacteria_6 cluster)
Acido-c16S rRNAUncultured Acidobacteria (Acidobacteria_4 cluster)
Plasmo16S rRNAPlasmodium
Brevar16S rRNABrevundimonas variabilis
Abri16S rRNASinorhizobium abri
Msrtian116S rRNAMesorhizobium tianhanense
Bkhubo116S rRNABurkholderia ubonensis
Bkhcari116S rRNASome Burkholderia (B. caribensis and B. hospita)
Bkhcari216S rRNASome Burkholderia (B. caribensis and B. hospita)
Bkhcary16S rRNABurkholderia caryophylli
Bkhglat16S rRNABurkholderia glathei
Varpar16S rRNAVariovorax paradoxus
Alca216S rRNAAlcaligenaceae
Ral216S rRNARalstonia
Raltaiw116S rRNARalstonia taiwanensis
Neiss116S rRNANeisseriales
Neiselon16S rRNANeisseria elongata
Eikcor216S rRNAEikenella corrodens and Neisseria meningitidis
TF53916S rRNAAcidithiobacillus ferroxidans
Pant116S rRNAPantoea
Psdhalo216S rRNAPseudomonas halodenitrificans
Psdresi116S rRNAPseudomonas resinovorans
Psdtaet216S rRNAPseudomonas taetrolens
Psdviri116S rRNAPseudomonas viridiflava
Nitocea216S rRNANitrosococcus oceanus
Xantho216S rRNAXanthomonas
Polycell16S rRNAPolyangium cellulosum
Campy16S rRNACampylobacter
Bacil116S rRNABacillus
Paeazo16S rRNAPaenibacillus azotofixans
Clost16S rRNAClostridium
Fuso116S rRNAFusobacteriales
Pseu116S rRNAPseudomonas
PseuBC2-1016S rRNAPseudomonas clusters C3, C4, C5
PseuBC2BC316S rRNAPseudomonas clusters C3, C4, C5
PseuBC2BC3-216S rRNAPseudomonas clusters C3, C4, C5
Pseu416S rRNAPseudomonas cluster C1
Pseu516S rRNAPseudomonas cluster C1
Pseu616S rRNAPseudomonas cluster C1
Pseu716S rRNAPseudomonas cluster C1
Pseu816S rRNAPseudomonas putida complex and P. stutzeri complex
Pseu2216S rRNAPseudomonas clusters C3, C4, C5
Pseu2816S rRNAPseudomonas cluster C4
Kluy316S rRNAKluyveromyces
Kluy516S rRNAKluyveromyces
Azira116S rRNAAzospirillum irakense cluster
Azama416S rRNAAzospirillum amazonense cluster
Azama716S rRNAAzospirillum amazonense cluster
Azama816S rRNAAzospirillum amazonense cluster
Azobr116S rRNASome Azospirillum (A. brasilense and A. lipoferum) and Roseomonas faurieae
Azoli116S rRNAAzospirillum lipoferum cluster and Azospirillum brasilense et rel. cluster
Azolibr116S rRNAAzospirillum lipoferum cluster and Azospirillum brasilense et rel. cluster
Rhira116S rRNARhizobium radiobacter cluster (including Agrobacterium tumefaciens)
Rhira216S rRNARhizobium radiobacter cluster (including Agrobacterium tumefaciens)
Rhira316S rRNARhizobium radiobacter cluster (including Agrobacterium tumefaciens)
Rhira716S rRNARhizobium radiobacter cluster (including Agrobacterium tumefaciens)
Rhizo316S rRNARhizobium
Rhizo416S rRNARhizobium
Sino116S rRNASinorhizobium meliloti, S. saheli, S. terrangeae, S. kummerowiae
Ochro16S rRNASome Ochrobactrum
Beij216S rRNABeijerinckia
Bkmuvian16S rRNASome Burkholderia (some B. cepacia, B. multivorans, and B. vietnamiensis)
Bktrop116S rRNABurkholderia tropica
Bktrop216S rRNABurkholderia tropica
Bktrop316S rRNABurkholderia tropica
Bktrop416S rRNABurkholderia tropica
Bkand16S rRNABurkholderia andropogonis
Hefri216S rRNAHerbaspirilum seropedicae
Hefri316S rRNAHerbaspirilum huttiense, Herbaspirillum putei, Herbaspirillum magnetovibrio
Hefri416S rRNAHerbaspirilum huttiense, Herbaspirillum putei, Herbaspirillum magnetovibrio
Heser116S rRNAHarbaspirillum seropedicae
Heser316S rRNAHarbaspirillum seropedicae
Janaga216S rRNAJanthinobacterium agaricidamnosum
Janaga316S rRNAJanthinobacterium agaricidamnosum
Jant116S rRNAJanthinobacterium
Acave116S rRNAAcidovorax aveneae cluster
Acave316S rRNAAcidovorax aveneae cluster
Acave416S rRNAAcidovorax aveneae cluster
Conide216S rRNAComamonas nitrativorans-denitrifans cluster
Delac216S rRNADelftia acidovorans
Delac316S rRNADelftia acidovorans
Delf116S rRNADelftia cluster
HyMa216S rRNAHydrogenophaga-Macromonas cluster
Hypal116S rRNAHydrogenophaga palleronii
Hypal216S rRNAHydrogenophaga palleronii
Aldef516S rRNAAlcaligenes defragans
Alfae116S rRNAAlcaligenes faecalis cluster
Alfae216S rRNAAlcaligenes faecalis cluster
Alfae516S rRNAAlcaligenes faecalis cluster
Alfae716S rRNAAlcaligenes faecalis cluster
Achrom216S rRNAAchromobacter cluster
Achrom316S rRNAAchromobacter cluster
Achrom416S rRNAAchromobacter cluster
Rasol116S rRNARalstonia solanacearum
Chrom416S rRNAChromobacterium cluster
Metphi116S rRNAMethylophilus cluster
Metphi216S rRNAMethylophilus cluster and uncultured Methylophylaceae cluster
Metphi316S rRNAMethylophilus cluster and uncultured Methylophylaceae cluster
MetMet116S rRNAMethylobacillus glycogenes, Methylobacillus praetensis and Methylomonas methylovora
Metvor216S rRNAMethylovorus mays, Methylovorus glycosetrophus and Methylobacillus
Metvor316S rRNAMethylovorus mays, Methylovorus glycosetrophus and Methylobacillus
Metmic116S rRNAMethylomicrobium cluster
Metmic216S rRNAMethylomicrobium cluster
Metmic516S rRNAMethylomicrobium cluster
Metmic616S rRNAMethylomicrobium cluster
Metmic716S rRNAMethylomicrobium cluster
Metmic816S rRNAMethylomicrobium cluster
Metmic916S rRNAMethylomicrobium agile and Methylomicrobium album
Metsar416S rRNAMethylosarcina cluster
Metsar516S rRNAMethylosarcina quisquillarum and Methylosarcina fibrata
Metsar716S rRNAMethylosarcina quisquillarum and Methylosarcina fibrata
enter516S rRNAEnterobacteriaceae
enter616S rRNAEscherichia/Citrobacter/Salmonella/Shigella cluster
enter316S rRNASome Escherichia (E. coli and E. alberti)
enter416S rRNASome Escherichia (E. coli and E. alberti)
Xenem116S rRNAXenorhabdus nematophila
Xenem216S rRNAXenorhabdus nematophila
Xenem316S rRNAXenorhabdus nematophila
Xenem416S rRNAXenorhabdus nematophila
Xenem516S rRNAXenorhabdus nematophila
Xenem616S rRNAXenorhabdus nematophila
Xenem716S rRNAXenorhabdus nematophila
Xebe316S rRNAXenorhabdus bedignii
Pagg516S rRNAPantoea agglomerans
Pagg616S rRNAPantoea agglomerans
Kgra316S rRNAKlebsiella granulomatis (within K. pneumoniae cluster)
Raqu216S rRNARahnella aquatilis
RaSef216S rRNARahnella and Serratia fonticula
RaSef416S rRNARahnella and Serratia fonticula
Serr116S rRNASome Serratia
CitBut116S rRNACitrobacter cluster and Buttiauxella
CitBut216S rRNACitrobacter cluster and Buttiauxella
CitBut316S rRNACitrobacter cluster and Buttiauxella
Eamy416S rRNAErwinia amylovora cluster
Eamy516S rRNAErwinia amylovora cluster
Eper116S rRNAErwinia rhapontici and some Pantoea agglomerans
Ptol116S rRNAPantoea toletana
Pechr1016S rRNAPectobacterium chrysanthemi
Pechr616S rRNAPectobacterium chrysanthemi
Pechr816S rRNAPectobacterium chrysanthemi
Sal116S rRNASalmonella
Sapath316S rRNASalmonella enterica subsp. enterica serovar Thompson and serovar paratyphi
Sapath416S rRNASalmonella enterica subsp. enterica serovar Thompson and serovar paratyphi
Vibr116S rRNAVibrionaceae
Franc116S rRNAFrancisella cluster
FraWol116S rRNAFrancisella cluster
Frphi116S rRNAFrancisella philomiragia and F. piscidida
Frphi216S rRNAFrancisella philomiragia and F. piscidida
Frtul316S rRNAFrancisella tularensis
Frtul416S rRNAFrancisella tularensis
Frtul716S rRNAFrancisella tularensis
Psres16S rRNAPseudomonas resinovorans cluster
Pscit116S rRNAPseudomonas citronellolis
Psflav416S rRNAPseudomonas flavescens
Pslut116S rRNAPseudomonas luteola and Pseudomonas andersoni
Pslut216S rRNAPseudomonas luteola and Pseudomonas andersoni
Psole116S rRNAPseudomonas oleovorans cluster
Psole216S rRNAPseudomonas oleovorans cluster
Azovi216S rRNAAzotobacter vinelandii
AzoAzo316S rRNAAzotobacter vinelandii and Azorhizophilus paspali
Azobei16S rRNAAzotobacter beijrenckii
Thio316S rRNAThiobacillus denitrificans cluster
Thio416S rRNAThiobacillus denitrificans cluster
Xant216S rRNAXanthomonas
Xano316S rRNAXanthomonas anoxopodis
Xano416S rRNAXanthomonas anoxopodis
Sten1216S rRNAStenotrophomonas
Sten1316S rRNAStenotrophomonas
Sten1416S rRNAStenotrophomonas
Sten1516S rRNAStenotrophomonas
Sten416S rRNAStenotrophomonas cluster
SteXan216S rRNAXanthomonas and some Stenotrophomonas
SteXan316S rRNAStenotrophomonas cluster and Xanthomonas sacchari cluster (including X. campestris, X. translucens, X. sacchari, X. hyacithi, X. albilineans, X. melonis)
Lyso216S rRNALysobacter cluster
Aesal116S rRNAAeromonas salmonicida cluster
Aero216S rRNASome Aeromonas
MyxCor116S rRNAMyxococcus/Corallococcus
MyxCor1116S rRNAMyxococcus/Corallococcus
MyxCor1216S rRNAMyxococcus/Corallococcus
MyxCor1416S rRNASome Myxococcus
MyxCor1516S rRNASome Myxococcus
MyxCor1716S rRNASome Myxococcus
MyxCor1816S rRNASome Myxococcus
MyxCor1916S rRNASome Myxococcus
MyxCor2116S rRNASome Myxococcus
MyxCor2216S rRNASome Myxococcus
Coralc416S rRNASome Corallococcus
Coralc816S rRNASome Corallococcus
Corallc1016S rRNASome Corallococcus
Corallc516S rRNASome Corallococcus
Corallc616S rRNASome Corallococcus
Corallc916S rRNASome Corallococcus
Anmxb516S rRNAAnaeromyxobacter
Anmxb616S rRNAAnaeromyxobacter
StigMyx916S rRNAStigmatella
Polyang1016S rRNAPolyangium
Polyang216S rRNAPolyangium
Chond216S rRNAChondromyces
Chond516S rRNAChondromyces
Chond616S rRNAChondromyces
Chond716S rRNAChondromyces
un3Chon216S rRNAUncultured Chondromyces
un3Chon316S rRNAUncultured Chondromyces
un3Chon516S rRNAUncultured Chondromyces
un43Chon1016S rRNAUncultured Chondromyces
un43Chon1216S rRNAUncultured Chondromyces
un43Chon1316S rRNAUncultured Chondromyces
un43Chon416S rRNAUncultured Chondromyces
un43Chon716S rRNAUncultured Chondromyces
un43Chon816S rRNAUncultured Chondromyces
un43Chon916S rRNAUncultured Chondromyces
un4Chon416S rRNAUncultured Chondromyces
Halian216S rRNAHaliangium
Halian316S rRNAHaliangium
Halian516S rRNAHaliangium
Nancs116S rRNANannocystis
Nancs716S rRNANannocystis
Nancs816S rRNANannocystis
CystbSUB116S rRNACystobacterineae
CystbSUB216S rRNACystobacterineae
CystArch116S rRNACystobacter/Archangium
CystArch216S rRNACystobacter/Archangium
CystArch316S rRNACystobacter/Archangium
Cystb116S rRNACystobacter
Cystb316S rRNACystobacter
Cystb616S rRNACystobacter
Cystb816S rRNACystobacter
CystMel216S rRNACystobacter/Melittangium
CystMel316S rRNACystobacter/Melittangium
unCyst116S rRNAUnculcured Cystobacteriaceae
unCyst216S rRNAUnculcured Cystobacteriaceae
unCyst316S rRNAUnculcured Cystobacteriaceae
Bac2516S rRNABacillus subtilis et rel. cluster
Bacsub1216S rRNASome Bacillus subtilis spp.
Bacsub716S rRNASome spp. from Bacillus subtilis et rel. cluster
Bacsub916S rRNASome spp. from Bacillus subtilis et rel. cluster
Bacaga216S rRNABacillus agaradherens
Bacaga316S rRNABacillus agaradherens
Bacazo316S rRNABacillus azotoformans
Bacbad216S rRNABacillus badius
Bacbae216S rRNABacillus baekryungensis
Bacbae316S rRNABacillus baekryungensis
Bacben116S rRNABacillus bengalicus
Baccer216S rRNABacillus cereus et rel. cluster
Baccer716S rRNABacillus cereus et rel. cluster
Bac1016S rRNASome Bacillus cereus and B. thuringiensis
Baccer816S rRNASome Bacillus cereus and B. thuringiensis
Baccir116S rRNABacillus circulans
Baccir316S rRNABacillus circulans
Baccla516S rRNABacillus clausii and B. gibsonii
Baccoa116S rRNABacillus coagulans
Baccoh216S rRNABacillus cohnii
Baccoh316S rRNABacillus cohnii
Baccoh416S rRNABacillus cohnii
Bacfara116S rRNABacillus farraginis and Kurthia zopfii
Bacfara216S rRNABacillus fortis et rel. cluster
Bacfor116S rRNABacillus fortis et rel. cluster
Bacfir516S rRNABacillus firmus
Bacfle116S rRNABacillus flexus
Bacfun 316S rRNASporolactobacillus dextrus
Bacfun 616S rRNASporolactobacillus dextrus
Bachor116S rRNABacillus horikoshii
Bachrt116S rRNABacillus horti
Bacjeo216S rRNABacillus jeotgali
Bacjeo516S rRNABacillus jeotgali
Bacjeo616S rRNABacillus jeotgali
Backru516S rRNABacillus krulwichiae
Bacmac416S rRNABacillus macroides et rel. cluster
Bacmar116S rRNABacillus marsiflavi
Bacmet116S rRNABacillus methanolicus
Bacmet216S rRNABacillus methanolicus
Bacmyc116S rRNABacillus mycoides
Bacmyc316S rRNABacillus mycoides
Bacoler116S rRNABacillus oleronius
Bacpich216S rRNABacillus pichinotii
Bacpich316S rRNABacillus pichinotyi
Bacpsc 316S rRNABacillus pseudoalcaliphilus and Bacillus alcalophilus
Bacpsf116S rRNABacillus pseudofirmus
Bacpsf316S rRNABacillus pseudofirmus
Bacpum216S rRNABacillus pumillus
Bacsmi116S rRNABacillus smithii
Bacsmi416S rRNABacillus smithii
Bacsmi516S rRNABacillus smithii
Bacsprt116S rRNABacillus sporothermodurans and Bacillus oleronius
Bacsprt216S rRNABacillus sporothermodurans and Bacillus oleronius
Bacmis916S rRNABacillus vedderi
Bacved 316S rRNABacillus vedderi
Bacved 416S rRNABacillus vedderi
PeBr16S rRNAPaenibacillus and Brevibacillus
Paen516S rRNAPaenibacillus
Paen616S rRNAPaenibacillus
Ppop416S rRNAPaenibacillus popolliae et rel. cluster (including P. lentimorbus, P. thyaminolyticus)
Ppotu16S rRNAPaenibacillus popilliae et rel. and Peanibacillus turicensis
Pnaf116S rRNAPaenibacillus naphthalenovorans
Pazma116S rRNAPaenibacillus azotofixans and P. maquariensis
Pbo1maq16S rRNASome Paenibacillus maquariensis spp. and uncultured Peanibacillus
Pbo116S rRNAPaenibacillus borealis
Pbo216S rRNAPaenibacillus borealis
Paeni7-116S rRNAPaenibacillus borealis
Palv16S rRNAPaenibacillus alvei
Palv216S rRNAPaenibacillus apiarius
Pamy316S rRNASome Paenibacillus spp. from Paenibacillus amylolyticus et rel. cluster
Behi116S rRNABacillus ehimensis (within Paenibacillus koreensis cluster)
Bchikob216S rRNABacillus chinolyticus and Paenibacillus kobensis
Pchfabo116S rRNAPaenibacillus chibensis, Paenibacillus flavisporus, Paenibacillus borealis
Pchib216S rRNAPaenibacillus chibensis cluster
Pchinapi16S rRNAPaenibacillus chinjuensis and Paenibacillus apiarius
Pcukoho116S rRNAPaenibacillus curdlanolyticus and Paenibacillus kobensis
Pdae116S rRNAPaenibacillus daejeonensis et rel. cluster (including P. polymyxa)
Pdae216S rRNAPaenibacillus daejeonensis et rel. cluster (including P. polymyxa)
Phon116S rRNACohnella (Paenibacillus honkongensis)
Phon216S rRNACohnella (Paenibacillus honkongensis)
Pkor116S rRNAPaenibacillus koreensis
Pkor216S rRNAPaenibacillus koreensis
Pkol316S rRNAPaenibacillus koleovorans
Plac16S rRNAPaenibacillus lactis
Plar416S rRNAPaenibacillus larvae
Plen216S rRNAPaenibacilllus lentimorbus
Pnem116S rRNAPaenibacillus nematophilus
Pnem216S rRNAPaenibacillus nematophilus
Pnem316S rRNAPaenibacillus nematophilus
Pnem416S rRNAPaenibacillus nematophilus
Pnem616S rRNAPaenibacillus nematophilus
Pnem716S rRNAPaenibacillus nematophilus
Pval216S rRNAPaenibacillus validus
Pvalnaf16S rRNAPaenibacillus validus, Paenibacillus naphtalenovorans
Pvalnafchin216S rRNAPaenibacillus validus, Paenibacillus naphtalenovorans, Paenibacillus chinjuensis
Pvel416S rRNAPaenibacillus mucilaginosus
Pvelch116S rRNAPaenibacillus velasolus and Paenibacillus chinjuensis
Pvelch216S rRNAPaenibacillus velasolus and Paenibacillus chinjuensis
Pxya16S rRNAPaenibacillus xylanilyticus and P. illinoisensis
Palgi216S rRNAPaenibacillus alginoliticus
PalgiG116S rRNAPaenibacillus alginoliticus et rel. cluster
PalgiG316S rRNAPaenibacillus alginoliticus et rel. cluster
Brbac1816S rRNABrevibacillus borstelensis
Brbac216S rRNABrevibacillus
Brbac316S rRNABrevibacillus
Brbac416S rRNABrevibacillus
Brbac516S rRNABrevibacillus
Brbac616S rRNABrevibacillus agri
Brbac816S rRNABrevibacillus
ChryD116S rRNAChryseobacterium gleum
ChryD216S rRNASome Chryseobacterium
ChryD316S rRNASome Chryseobacterium
ChryD416S rRNASome Chryseobacterium
ChryD516S rRNASome Chryseobacterium
ChryD616S rRNASome Chryseobacterium
ChryD716S rRNASome Chryseobacterium
Chrygl116S rRNAChryseobacterium gleum
Chrygl316S rRNAChryseobacterium gleum
Chryme116S rRNAChryseobacterium meningosepticum cluster
ChrysR16S rRNAChryseobacterium et rel. cluster
Artb116S rRNAArthrobacter
Artb216S rRNAArthrobacter
Artb316S rRNAArthrobacter
Micco916S rRNAMicrococcus
Frank1116S rRNAFrankia
Frank1316S rRNAFrankia
Frank1516S rRNAFrankia
Frank1616S rRNAFrankia
Kisp516S rRNAKitasatospora/Streptomyces
Kisp616S rRNAKitasatospora/Streptomyces
Kisp716S rRNAKitasatospora/Streptomyces
Kisp816S rRNAKitasatospora/Streptomyces
Kisp916S rRNAKitasatospora griseola
Stsp1016S rRNAStreptosporangium
Stsp1616S rRNAStreptosporangium
Stsp1916S rRNAStreptosporangium
Cornba1116S rRNACorynebacterium
Cornba1316S rRNACorynebacterium
Cornba516S rRNACorynebacterium
Cornba816S rRNACorynebacterium
Dietz416S rRNADietzia
Dietz616S rRNADietzia
Dietz716S rRNADietzia
Dietz816S rRNADietzia
Sacchps1016S rRNASaccharopolyspora
Sacchps1416S rRNASaccharopolyspora
Agrm416S rRNAAgromyces
Agrm516S rRNAAgromyces
Agrm716S rRNAAgromyces
MicmFAM1316S rRNAMicromonosporaceae
MicmFAM1516S rRNAMicromonosporaceae
MicmFAM616S rRNAMicromonosporaceae
Micm316S rRNAMicrolunatus
Nono116S rRNANonomuraea
Tetsp316S rRNATetrasphaera
Terrb116S rRNATerrabacter/Janibacter
Terrb316S rRNATerrabacter/Janibacter
Terrb516S rRNATerrabacter/Janibacter
Terrb716S rRNATerrabacter/Janibacter
Them1516S rRNAThermomonospora curvata
Them1616S rRNAThermomonospora
Them1716S rRNAThermomonospora
Thebi1016S rRNAThermobifida alba
Thebi716S rRNAThermobifida fusca
Bifid516S rRNABifidobacterium/Aeriscardovia
OilvGAM1S-S-OicG1-064316S rRNAOlavius ilvae and Olavius crassitunicatus Gamma 1 symbionts
Oalg/OilvGAM3S-G-OaiG3-0665-a-A-1816S rRNAOlavius algarvensis / Olavius ilvae Gamma 3 symbionts, some env. Clones
OalgDEL1S-S-OaD1-0136-a-A-1816S rRNAOlavius algarvensis Delta 1 symbiont
OilvDEL1S-S-OiD1-0136-a-A-1816S rRNAOlavius ilvae Delta 1 symbiont, unc. bacterium AY907763
Oalg/OilvDEL3S-G-OaiD3-1449-a-A-1816S rRNAOlavius algarvensis/ Olavius ilvae Delta 3 symbiont
OalgDEL4S-S-OaD4-1427-a-A-1816S rRNAOlavius algarvensis Delta 4 symbiont
SPIROS-G-OISpi-0136-a-A-1816S rRNAspirochete symbiont group of gutless oligochaetes
CAOC16S rRNACapnocytophaga ochracea
TMED16S rRNATreponema medium
TLEC16S rRNATreponema lecithinolyticum
TAMY16S rRNATreponema amylovorum
XenoGam44116S rRNAXenoturbella bocki gammaproteobacterial endosymbiont and relatives
XenoGam66616S rRNAXenoturbella bocki gammaproteobacterial endosymbiont and relatives
XenoGam72716S rRNAXenoturbella bocki gammaproteobacterial endosymbiont and relatives
SymLl125116S rRNAL. lacteus symbiont
SymAf57616S rRNAA. fragilis symbiont
SymAf127216S rRNAA. fragilis symbiont
Symco216S rRNAC. orbicularis symbiont
Rhodano 227S-*-Rno-0227-a-A-2116S rRNAUncultured Rhodanobacter species closely related to Rhodanobacter thiooxydans
LEE8216S rRNASome members of the genus Leeuwenhoenkiella
DOK82716S rRNASome members of the genus Dokdonia
FL19716S rRNAmarine uncultured Flavobacteria clade VIS4
VIS6-81416S rRNAmarine uncultured Flavobacteria clade VIS6
VIS5-58616S rRNAmarine uncultured Flavobacteria clade VIS5
FL84516S rRNAmarine uncultured Flavobacteria clade VIS2
VIS3-18316S rRNAmarine uncultured Flavobacteria clade VIS3
VIS1-57516S rRNAmarine uncultured Flavobacteria clade VIS1
PSE22716S rRNAPseudomonas spp.
PSE128416S rRNAPseudomonas spp.
TOL1028S-S-TOL-1028-a-A-1816S rRNAStrain TOL (from oleate enrichment)
TSP436S-*-0436-a-A-1816S rRNAClones TPA, TST, and JA2 (from Palmitate, Stearate, and Oleate enrichments, respectively)
MPA1446S-*-1446-a-A-1816S rRNAStrain MPA (from Palmitate enrichment)
MST445S-*-0445-a-A-1816S rRNAClone MST (from Stearate enrichment)
MSP1445S-*-1445-a-A-1816S rRNAClones MOL and MLI (from Oleate and Linoleate enrichment, respectively)
DEN22016S rRNAAcetate-denitrifying cluster and some members of the Comamonadaceae family
DEN220a16S rRNAAcetate-denitrifying cluster and some members of the Rhodocyclaceae family
DEN44116S rRNAAcetate-denitrifying cluster and some members of the Rhodocyclaceae family
DEN44416S rRNAAcetate-denitrifying cluster
DEN145416S rRNAAcetate-denitrifying cluster
FB64816S rRNAThioturbo danicus and strain DK4
FB74116S rRNAThioturbo danicus and strain DK4
FB84216S rRNAStrain DK4
Rotcl116S rRNACluster related to Methanosaeta concilii
Rotcl216S rRNACluster related to endosymbiont of P. nasuta
Rotp1316S rRNAClone Rot13
Rotp1716S rRNAClone Rot17
WPF46416S rRNAfilaments from hydrothermal vents near White Point
VSO67316S rRNAUnattached, vacuolate, sulfur-oxidizing bacteria
Chlorb I 440S-*-Chlorb I-0440-a-A-2016S rRNAphylotype affiliated with the familiy Chlorobiaceae (DGGE band 21ws)
Chlorb II 842S-*-Chlorb II-0842-a-A-2016S rRNAphylotype affiliated with the familiy Chlorobiaceae (DGGE band 24ws)
Chlorb III 441S-*-Chlorb III-0441-a-A-2016S rRNAphylotype affiliated with the familiy Chlorobiaceae (DGGE bands 25s, 26s)
DEN6716S rRNAMethanol-utilizing denitrifying cluster group A closely related to the obligate methylotrophs Methylobacillus and Methylophilus in the order Methylophilales
MET121616S rRNAOrder Methylophilales
SAP55316S rRNAMostly Saprospiraceae family
AEHY16S rRNAAeromonas hydrophila
AESA16S rRNAAeromonas salmonicida subsp. Salmonicida
EDIC16S rRNAEdwardsiella ictaluri
ESCO16S rRNAEscherichia coli
FLBR16S rRNAFlavobacterium branchiophilum
FLCO16S rRNAFlavobacterium columnare
FLPS16S rRNAFlavobacterium psychrophilum
TEMA16S rRNATenacibaculum maritimum
MYCH16S rRNAMycobacterium chelonae
MYFO16S rRNAMycobacterium fortuitum
MYMA16S rRNAMycobacterium marinum
PISA16S rRNAPiscirickettsia salmonis
RESA16S rRNARenibacterium salmoninarum
STAU16S rRNAStaphylococcus aureus
STIN16S rRNAStreptococcus iniae
VASA16S rRNAVagococcus salmoninarum
PHPH16S rRNAPhotobacterium phosphoreum
YERU16S rRNAYersinia ruckeri type I
Geo/Blasto16S rRNAGeodermatophilus/Blastococcus group
Modesto16S rRNAModestobacter genus
UP23b16S rRNAUrothoe poseidonis clone UP23b
Curvi99716S rRNAGenus Curvibacter
CYT144816S rRNACytophaga spp.
CYT143816S rRNACytophaga spp.
NOR5-73016S rRNANOR5 cluster (Gammaproteobacteria)
NOR5-13016S rRNANOR5 isolate KT71 (Gammaproteobacteria)
ROS53716S rRNAMarine alpha cluster
KT13-23116S rRNAKT1117 (Roseobacter lineage isolate)
KT09b16S rRNAKT0917 (Roseobacter lineage isolate)
KT09c16S rRNAKT0917 (Roseobacter lineage isolate)
RC103116S rRNAKT0202a (Roseobacter lineage isolate)
RC123916S rRNAKT0202a (Roseobacter lineage isolate)
Ros7-102916S rRNAJP7.1 group (marine alpha cluster)
Erythro6916S rRNAJP13.1 group (Erythrobacter)
Rhizo21816S rRNAJP66.1 group (Phyllobacterium)
MALF-116S rRNAMarine alpha cluster
MALF-216S rRNAMarine alpha cluster
RSB6716S rRNASubgroup of marine alpha cluster
KT1316S rRNASubgroup of marine alpha cluster
Lis-125516S rRNAGenus Listeria, Bacillus thermosphacta, Bacillus campestris
Salm-6323S rRNASalmonella spp., Plesiomonas shigelloides
BEG81116S rRNAFrasassi Beggiatoa clade
MTB77016S rRNAMycobacterium tuberculosis strains
MTB22616S rRNAMycobacterium tuberculosis strains
MTB18716S rRNAMycobacterium tuberculosis strains
MAVP18716S rRNAMycobacterium avium subsp. avium Mycobacterium avium subsp. paratuberculosis
MAVP51523S rRNAMycobacterium avium subsp. Avium Mycobacterium avium subsp. Paratuberculosis
MAC254323S rRNAMycobacterium avium complex
MIN35116S rRNAMycobacterium intracellulare
MIN158623S rRNAMycobacterium intracellulare
18Alf-0218S-*-18ALF-0218-a-A-1816S rRNAMethanotrophic symbiont of Sphagnum mosses
18Alf-1437S-*-18ALF-1437-a-A-1816S rRNAMethanotrophic symbiont of Sphagnum mosses
SphEch_124916S rRNASphingomonas echinoides
SteMal_43916S rRNAStenotrophomonas maltophilia
SEEP1a-473S-*-SP1a-0473-a-A-2316S rRNADesulfosarcina/Desulfococcus subgroup SEEP-SRB1a (ANME-2 partner)
SEEP1a-1441S-*-SP1a-1441-a-A-1816S rRNADesulfosarcina/Desulfococcus subgroup SEEP-SRB1a (ANME-2 partner)
SEEP1c-1309S-*-SP1c-1309-a-A-2116S rRNADesulfosarcina/Desulfococcus subgroup SEEP-SRB1c
SEEP1f-153S-*-SP1f-0153-a-A-1816S rRNADesulfosarcina/Desulfococcus subgroup SEEP-SRB1f
Pedo_125016S rRNAPedomicrobium strains
SPIRO65716S rRNASponge-associated phylogenetic lineages of the Spirochaetes phylum.
SPIRO100916S rRNASponge-associated phylogenetic lineages of the Spirochaetes phylum.
CYL16S rRNACylindrospermopsis raciborskii
Cboid198S-S-C.boid-0198-a-A-1818S rRNACandida boidinii
S-*-CFB-0655-a-A-18S-*-CFB-0655-a-A-1816S rRNAOTU 8 of CFB (Cytophaga-Flavobacterium-Bacteroides)
S-*-CFB-0730-a-A-18S-*-CFB-0730-a-A-1816S rRNAOTU 9 of CFB (Cytophaga-Flavobacterium-Bacteroides)
S-*-GNS-0667-a-A-18S-*-GNS-0667-a-A-1816S rRNAOTU 11 and 12 of GNSB (green nonsulfur bacteria)
S-*-Opitu-0744-a-A-18S-*-Opitu-0744-a-A-1816S rRNAOTU 13 of Verrucomicrobia
ANA10316S rRNAActinomyces naeslundii
FUS66416S rRNAFusobacterium nucleatum,
MIT58816S rRNAStreptococcus oralis
ODB102116S rRNAOctadecabacter spp.
RSHP99516S rRNARoseobacter sp. strain Shippagan group
GPU62216S rRNAGlaciecola punicea
GVstr21416S rRNAGlaciecola sp. strain GVstr214.6
SF82516S rRNAShewanella frigidimarina
PSYB47616S rRNAPsychrobacter spp.
MB-IC02216S rRNAMarinobacter sp. strain IC022 group
PB22316S rRNAPolaribacter spp.
GAN85016S rRNAGallibacterium
VP40316S rRNAVerrucomicrobium, most Prosthecobacter, and uncultured relatives
SPA71416S rRNAMost Spartobacteria and uncultured relatives
SPA64916S rRNAUncultured humic and acidic lake Spartobacteria
OPT116916S rRNAOpitutus spp. and uncultured relatives
Blsv103016S rRNABlastochloris viridis
Rbla137216S rRNARhodobacter blasticus
Rbmr15116S rRNARhodobium marinum, Rhodopseudomonas julia
Rvsl13916S rRNARhodovulum sulfidophilum
Cboid198S-S-C.boid-0198-a-A-1818S rRNACandida boidinii
KIN51618S rRNAKinetoplastida
CFX197S-*-Bact-0197-a-A-1816S rRNAEikelboom type 0092 Chloroflexi
CFX223S-*-Bact-0223-a-A-1816S rRNAEikelboom type 0092 Chloroflexi
CFX67aS-*-Bact-0067-a-A-1816S rRNAEikelboom type 0914 Chloroflexi
CFX67bS-*-Bact-0067-b-A-1816S rRNAEikelboom type 0914 Chloroflexi
NITROSO4E16S rRNAb-Proteobacterial ammonia oxidizers (also Nodularia sp.)
NSM1B16S rRNANitrosomonas europaea, Nitrosomonas eutropha, Nitrosococcus mobilis
NBAC216S rRNANitrobacter winogradskyi, Nitrobacter hamburgensis, Nitrobacter agilis (also Afipia clevelandensis, Afipia felis, Rhodopseudomonas palustris strain, Bradyrhizobium japonicume)
ERY17416S rRNASome Novosphingomonas, Erythrobacter and Porphyrobacter
PARA73916S rRNAOrder Rhodobacterales
RHIZ124416S rRNAOrder Rhizobiales
Lepto17516S rRNALeptothrix ochracea
Proti_445S-G-Proti-0445-a-A-1916S rRNAprimary symbiont of Euplotes samples POH1, EM, FL(12)-VI
Proti_467S-G-Proti-0467-a-A-1816S rRNAprimary symbiont of Euplotes samples POH1, EM, FL(12)-VI
Dbact653S-F-Dsb-0653-a-A-1816S rRNADesulfococcus/Desulfosarcina/Desulfonema
DSU65516S rRNAGenus Desulfurella
ATAM01S-S-A.tam-0775(A. Tamarense)-a-A-1818S rRNAAlexandrium tamarense species complex
ATNA02L-St-At.NA-373(A. tamarense)-a-A-1828S rRNAAlexandrium tamarense /North American clade/Orkney strains
ATWE0328S rRNAAlexandrium tamarense /Western European clade
ATME0428S rRNAAlexandrium tamarense / Mediterranean clade
DINO01S-C-DINO-1404(A. tamarense)-a-A-2018S rRNADinoflagellates / Dinophyceae
AOST01L-S-A.ost-484(A. ostenfeldii)-a-A-1828S rRNAAlexandrium ostenfeldii
AOST02S-S-A.ost-0232(A. ostenfeldii)-a-A-1818S rRNAAlexandrium ostenfeldii
Bfi826S-S-But-0826-a-1816S rRNAButyrivibrio fibrisolvens-related clones, phylum Firmicutes
Rum831S-S-Rum-0831-a-1616S rRNARumen clones in family Ruminococcaceae, phylum Firmicutes
Lac435S-S-Lac-0435-a-1616S rRNAClones in family Lachnospiraceae, phylum Firmicutes
Ral1436S-S-Rum-1436-1516S rRNARuminococcus albus-related clones, phylum Firmicutes
Rfl155S-S-Rum-0155-a-1516S rRNARuminococcus flavefaciens-related clones, phylum Firmicutes
Bac1080S-S-Bac-1080-a-1816S rRNAClones in order Bacteroidales, phylum Bacteroidetes
fir5-57516S rRNAFirm-5 (symbiotic Firmicutes phylotype in honey bee)
But1243S-S-But-1243-a-1816S rRNArumen Butyrivibrio clones
Clo549S-S-Clo-0549-a-1816S rRNAunclassified Rumen Clostridia clones
Inc852S-S-Inc-0852-a-1816S rRNARumen Inceatae Sedis XIII clones
Pse1257S-S-Pse-1257-1816S rRNARumen Pseudobutyrivibrio clones
Ace731S-S-0731-a-1816S rRNARumen Acetivibrio clones
Vei732S-S-0732-a-1816S rRNARumen Veillonellaceae clones
CV118S rRNAChromera velia
Pseudo12016S rRNArRNA group I pseudomonads
SUB 19616S rRNAStreptococcus uberis
APYO 18316S rRNAArcanobacterium pyogenes
CYL16S rRNACylindrospermopsis raciborskii
Syner19516S rRNASynergistes group 4 (Synergistetes PD-UASB-13)
Lmon16S rRNAListeria monocytogenes
CLOSs146S-S-CLOS-0146-a-1816S rRNAIncertae Sedis XI
CLOSs654S-S-CLOS-0654-a-1816S rRNAGrocilibacteraceae
RUMs278S-S-Rum-0278-a-1816S rRNARuminococcaceae
FIMs1029S-S-FIM-1029-1-1816S rRNAClostridiaceae 2
Cboid19818S rRNACandida boidinii
CJ216S rRNAPolaromonas naphthalenivorans strain CJ2
Bact531RS-D-Bact-0521-a-A-2016S rRNABacteria
bact363FS-D-Bact-0371-a-S-2016S rRNABacteria
R357S-D-Bact-0343-a-A-1516S rRNABacteria
Uni1392RS-*-Univ-1392-a-A-1516S rRNABacteria, Archaea, Eukarya
27FS-D-Bact-0008-c-S-2016S rRNABacteria
UA1406RS-*-Univ-1390-a-A-1716S rRNABacteria, Archaea, Eukarya
Bac927RS-D-Bact-0927-a-A-1716S rRNABacteria
1492RS-D-Bact-1492-a-A-2216S rRNABacteria
Arch20FS-D-Arch-0020-a-S-1916S rRNAArchaea
Primer 3S-D-Bact-0518-c-A-1716S rRNABacteria
518FS-D-Bact-0518-a-S-1716S rRNABacteria
Primer 2S-D-Bact-0340-a-A-1816S rRNABacteria
518RS-D-Bact-0518-a-A-1716S rRNABacteria
GM3FS-D-Bact-0008-a-S-1616S rRNABacteria
907RS-D-Bact-0907-a-A-2016S rRNABacteria
GM4RS-D-Bact-1492-a-A-1616S rRNABacteria
343FS-D-Bact-0343-a-S-1516S rRNABacteria
347FS-D-Bact-0347-a-S-1916S rRNABacteria
784FS-D-Bact-0784-a-S-1516S rRNABacteria
917FS-D-Bact-0917-a-S-1616S rRNABacteria
1099FS-D-Bact-1099-a-S-1616S rRNABacteria
534RS-D-Bact-0517-a-A-1816S rRNABacteria
798RS-D-Bact-0784-a-A-1516S rRNABacteria
803RS-D-Bact-0785-a-A-1916S rRNABacteria
1114RS-D-Bact-1091-a-A-1616S rRNABacteria
1407RS-D-Bact-1392-a-A-1616S rRNABacteria
968FS-D-Bact-0968-a-S-1716S rRNABacteria
1401RS-D-Bact-1385-a-A-1716S rRNABacteria
Pra46FS-D-Arch-0046-a-S-1516S rRNAArchaea
Parch340FS-D-Arch-0340-a-S-1816S rRNAArchaea
Parch519RS-D-Arch-0519-a-A-1616S rRNAArchaea
967FS-D-Bact-0967-a-S-1916S rRNABacteria
1046RS-D-Bact-1046-b-A-1916S rRNABacteria
U341FS-*-Univ-0341-b-S-1716S rRNABacteria, Archaea, Eukarya
U751FS-*-Univ-0750-a-S-1816S rRNABacteria, Archaea, Eukarya
Ab789FS-*-Univ-0789-a-S-1816S rRNABacteria, Archaea, Eukarya
Ab906FS-*-Univ-0906-a-S-1716S rRNABacteria, Archaea, Eukarya
U1053FS-*-Univ-1053-a-S-1616S rRNABacteria, Archaea, Eukarya
Ab779FS-D-Arch-0779-a-S-2016S rRNAArchaea
U529RS-*-Univ-0522-a-A-1816S rRNABacteria, Archaea, Eukarya
UA1406RS-*-Univ-1390-b-A-1716S rRNABacteria, Archaea, Eukarya
U1510RS-*-Univ-1492-a-A-2116S rRNABacteria, Archaea, Eukarya
Arch915RS-D-Arch-0911-a-A-2016S rRNAArchaea
Arch349FS-D-Arch-0349-a-S-1716S rRNAArchaea
Arch516FS-D-Arch-0516-a-S-2516S rRNAArchaea
Arch8FS-D-Arch-0008-a-S-1616S rRNAArchaea
Arch1492RS-D-Arch-1492-a-A-1916S rRNAArchaea
U515FS-*-Univ-0515-a-S-1916S rRNABacteria, Archaea, Eukarya
806RS-D-Bact-0787-b-A-2016S rRNABacteria
U519FS-*-Univ-0519-a-S-1816S rRNABacteria, Archaea, Eukarya
U779FS-*-Univ-0779-a-S-2016S rRNABacteria, Archaea, Eukarya
A519FS-D-Arch-0519-a-S-1516S rRNAArchaea
517FS-D-Bact-0517-a-S-1716S rRNABacteria
A519RS-D-Arch-0519-a-A-1916S rRNAArchaea
A806RS-D-Arch-0786-a-A-2016S rRNAArchaea
E806RS-D-Bact-0787-a-A-2016S rRNABacteria
Uni1390RS-*-Univ-1390-a-A-1816S rRNABacteria, Archaea, Eukarya
1492RcS-D-Bact-1494-a-A-2016S rRNABacteria
B1055f (Bergen)S-D-Bact.1055-a-S-1616S rRNABacteria
Uni522RS-*-Univ-0517-a-A-1516S rRNABacteria, Archaea, Eukarya
784FS-D-Bact-0784-a-S-1916S rRNABacteria
1061RS-D-Bact-1061-a-A-1716S rRNABacteria
Arch_344FS-D-Arch-0340-a-S-1416S rRNAArchaea
Arch855RS-D-Arch-0896-a-A-2016S rRNAArchaea
Arch1017RS-D-Arch-1041-a-A-1816S rRNAArchaea
8F S-D-Bact-0002-a-S-2616S rRNABacteria
909FS-D-Bact-0909-a-S-1816S rRNABacteria
1492RS-D-Bact-1493-a-A-1616S rRNABacteria
520FS-D-Bact-0564-a-S-1516S rRNABacteria
986FS-D-Bact-0967-c-S-1916S rRNABacteria
802RS-D-Bact-0785-b-A-1816S rRNABacteria
1027RS-D-Bact-1046-a-A-1916S rRNABacteria
967FS-D-Bact-0967-b-S-1916S rRNABacteria
1046RS-D-Bact-1028-b-A-1916S rRNABacteria
1391RS-D-Bact-1391-b-A-1716S rRNABacteria
530FS-D-Bact-0515-a-S-1616S rRNABacteria
1100RS-D-Bact-1100-a-A-1516S rRNABacteria
pH S-D-Bact-1522-a-A-2016S rRNABacteria
338S-D-Bact-0338-a-A-1916S rRNABacteria
6FS-D-Bact-0006-a-S-2016S rRNABacteria
27FS-D-Bact-0008-d-S-2016S rRNABacteria
39FS-D-Bact-0019-a-S-2016S rRNABacteria
41FS-D-Bact-0021-a-S-2016S rRNABacteria
63FS-D-Bact-0043-s-S-2116S rRNABacteria
64FS-D-Bact-0044-a-S-2116S rRNABacteria
533FS-D-Bact-0516-a-S-1816S rRNABacteria
908RS-D-Bact-0908-a-A-1816S rRNABacteria
8aFS-D-Arch-0008-b-S-1616S rRNAArchaea
9bFS-D-Bact-0009-a-S-1916S rRNABacteria
8mcFS-P-Nano-0008-a-S-1616S rRNANanoarchaea
217kFS-P-Nano-0216-a-S-2016S rRNANanoarchaea
519mcFS-P-Nano-0519-a-S-1816S rRNANanoarchaea
1114aRS-D-Arch-1098-a-A-1716S rRNAArchaea
515mcRS-P-Nano-0481-a-A-1816S rRNANanoarchaea
511mcRS-P-Nano-0485-a-A-1416S rRNANanoarchaea
934mcRS-P-Nano-0915-a-A-2016S rRNANanoarchaea
1114mcRS-P-Nano-1082-a-A-1716S rRNANanoarchaea
1406mcRS-P-Nano-1390-a-A-1716S rRNANanoarchaea
1513mcRS-P-Nano-1472-a-A-2116S rRNANanoarchaea
533RS-D-Bact-0515-a-A-1916S rRNABacteria
917FS-D-Bact-0917-a-S-1816S rRNABacteria
970FS-D-Bact-0970-a-S-1616S rRNABacteria
1050RS-D-Bact-1050-a-A-1616S rRNABacteria
1061RS-D-Bact-1061-a-A-1916S rRNABacteria
b341FS-D-Bact-0341-a-S-1716S rRNABacteria
b785S-D-Bact-0785-a-A-1916S rRNABacteria
630RS-D-Bact-1529-a-A-1716S rRNABacteria
909FS-D-Bact-0907-a-S-2016S rRNABacteria
917FwS-D-Bact-0917-a-S-1916S rRNABacteria
1061RvS-D-Bact-1061-a-A-2016S rRNABacteria
8f, 616VS-D-Bact-0008-b-S-2016S rRNABacteria
A21fS-D-Arch-0007-b-S-2016S rRNAArchaea
Ar9rS-D-Arch-0906-a-A-2216S rRNAArchaea
27FS-D-Bact-0009-b-S-1916S rRNABacteria
518RS-D-Bact-0518-b-A-1716S rRNABacteria
527fS-D-Bact-0517-a-S-1616S rRNABacteria
536rS-D-Bact-0519-a-A-1816S rRNABacteria
926rS-D-Bact-0907-a-A-1916S rRNABacteria
P609DS-D-Bact-0785-a-S-1816S rRNABacteria
68FS-D-Bact-0049-a-S-2116S rRNABacteria
1492RS-D-Bact-1492-a-A-1916S rRNABacteria
P63FS-D-Bact-0042-a-S-2116S rRNABacteria
P338fS-D-Bact-0337-a-S-2016S rRNABacteria
P518rS-D-Bact-0518-a-A-1716S rRNABacteria
Bact340FS-D-Bact-0340-a-S-1916S rRNABacteria
Bact806RS-D-Bact-0781-a-A-2616S rRNABacteria
Arch934FS-D-Arch-0915-a-S-1916S rRNAArchaea
Arch344FS-D-Arch-0344-a-S-2016S rRNAArchaea
A2FS-D-Arch-0007-a-S-2016S rRNAArchaea
A333FS-D-Arch-0333-a-S-1516S rRNAArchaea
A16FS-D-Arch-0008-a-S-1716S rRNAArchaea
U1517RS-*-Univ-1492-a-A-1916S rRNABacteria, Archaea, Eukarya
1391RS-D-Bact-1391-a-A-1716S rRNABacteria
A109fS-D-Arch-0109-a-S-1716S rRNAArchaea
A934bS-D-Arch-0934-a-A-1916S rRNAArchaea
A329S-D-Arch-0310-a-A-2016S rRNAArchaea
A693rS-D-Arch-0693-a-A-1516S rRNAArchaea
Arch958RS-D-Arch-0958-a-A-1916S rRNAArchaea
805RS-D-Bact-0787-a-A-1916S rRNABacteria
8F, pAS-D-Bact-0008-a-S-2016S rRNABacteria
Bakt_341FS-D-Bact-0341-b-S-1716S rRNABacteria
Bakt_805RS-D-Bact-0785-a-A-2116S rRNABacteria
bio-pBR5apos.SEFS-D-Bact-0006-a-S-2216S rRNABacteria
bio-pJBS-V3.SEFS-D-Bact-0947-a-S-2016S rRNABacteria
pBR-V1.ASRS-D-Bact-0101-a-A-20 16S rRNABacteria
B-V3.ASRS-D-Bact-1028-a-A-2016S rRNABacteria
GM12RS-D-Bact-1175-a-A-1916S rRNABacteria
Arch958BFS-D-Arch-0938-b-S-1916S rRNAArchaea
Arch958BFS-D-Arch-0958-a-S-1916S rRNAArchaea
Arch958VRS-D-Arch-0958-b-A-1916S rRNAArchaea
Arch9Fa S-D-Arch-0009-a-S-1716S rRNAArchaea
Arch9FbS-D-Arch-0009-b-S-1716S rRNAArchaea
Arch9FabS-D-Arch-0009-c-S-1716S rRNAArchaea
A8f (Bergen)S-D-Arch-0007-a-S-2116S rRNAArchaea
Arch958FS-D-Arch-0958-a-S-1916S rRNAArchaea
Bac967FbS-D-Bact-0967-d-S-1916S rRNABacteria
Bac967FcS-D-Bact-0967-e-S-1916S rRNABacteria
Bac967FdS-D-Bact-0967-f-S-1916S rRNABacteria
Bac967FeS-D-Bact-0967-g-S-1916S rRNABacteria
Arch1048RS-D-Arch-1048-a-A1716S rRNAArchaea
Bac1046RbS-D-Bact-1028-c-A-1916S rRNABacteria
Bac1046RcS-D-Bact-1028-d-A-1916S rRNABacteria
Bac1046RdS-D-Bact-1028-e-A-1916S rRNABacteria
P699DS-*-Univ-1100-a-S-1516S rRNABacteria, Archaea, Eukarya
A616DS-D-Arch-0010-a-S-1716S rRNAArchaea
P699RS-*-Univ-1100-a-A-1516S rRNABacteria, Archaea, Eukarya
P1425S-*-Univ-1525-a-A-1716S rRNABacteria, Archaea, Eukarya
Arch958FS-D-Arch-0938-a-S-1916S rRNAArchaea
967RS-D-Bact-0967-a-A-1916S rRNABacteria
U906RS-*-Univ-0906-a-A-1716S rRNABacteria, Archaea, Eukarya
U1053RS-*-Univ-1053-a-A-1616S rRNABacteria, Archaea, Eukarya
Arch915FS-D-Arch-0915-a-S-2016S rRNAArchaea
P609RS-D-Bact-0785-a-A-1816S rRNABacteria
pBR-V1.ASFS-D-Bact-0101-a-S-2016S rRNABacteria
bio-pJBS-V3.SERS-D-Bact-0947-a-A-2016S rRNABacteria
NebProb203S-S-Neby-0203-a-A-1816S rRNACandidatus Nebulobacter yamunensis
FNFProb759S-*-Bact-0759-a-A-1716S rRNABacteroidetes, Francisellaceae, other prokaryotes
CF418S-P-Flavo-0418-a-S-1816S rRNAPhylum Bacteroidetes
Ng0216S rRNANosema / Vairimorpha genus (microsporidia)
Dd0416S rRNADictyocoela (microsporidia)
AQI33816S rRNAPhylum Aquificae (except Desulfurobacteriaceae)
SFH64616S rRNASulfurihydrogenibium spp. (except S. Yellowstonense) including Nakabusa microbial mat sequences
Deflu_197S-S-Deflu-0197-a-A-2016S rRNACandidatus Defluviella procrastinata
CyrIn_142S-S-Cyrz-0142-a-A-2316S rRNACandidatus Cyrtobacter zanobii
Faecali69816S rRNAFaecalibacterium and relatives
Clep866S-*-Clep-0866-a-A-1816S rRNAmembers of the Clostridium leptum subgroup
Rcal733S-*-Rcal-0733-a-A-2016S rRNAmembers of the Ruminococcus callidus species
Cvir1414S-*-Cvir-1414-a-A-1816S rRNAClostridium viride cluster
Edes635S-*-Edes-0635-a-A-1816S rRNAEubacterium desmolans species
Bfrag 998S-S-Bfrag-0998-a-A-2016S rRNABacteroides fragilis
Bvulg 1017S-S-Bvulg-1017-a-A-2116S rRNABacteroides vulgatus
Fprau0645S-*-Fprau-0645-a-A-2316S rRNAFeacalibacterium (Fusobacterium) prausnitzii and relatives
Mcs487S-S-Mcs-0487-a-A-2116S rRNAMucispirillum spp.
Mcs547S-S-Mcs-0547-a-A-2016S rRNAMucispirillum spp.
MUC-1437S-G-Akk-1437-a-A-2016S rRNAAkkermansia muciniphila
Bacid116S rRNAB. acidifaciens Group 1
Bacid216S rRNAB. acidifaciens Group 2
Bacid316S rRNAB. acidifaciens Group 3
Bot16S rRNAB. ovatus and B. thetaiotaomicron
Bova16S rRNABacteroides ovatus
Bthe16S rRNABacteroides thethaiotaomicron
Buni16S rRNABacteroides uniformis
Bcac16S rRNABacteroides caccae
P(T)AFO16S rRNATannerella forsythensis (Bacteroides forsythus)
POGI16S rRNAPorphyromonas gingivalis and uncultured Porphyromonas
PRIN16S rRNAPrevotella intermedia, Prevotella falsenii and uncultured Prevotella
Bovat 1028S-S-Bovat-1028-a-A-1916S rRNABacteroides ovatus
Bdist 1025S-S-Bdist-1025-a-A-1916S rRNABacteroides distasonis (Parabacteroides distasonis)
Bputre 698S-S-Bputre-698-a-A-2016S rRNABacteroides putredinis (Alistipes putredinis)
Efs23S rRNAEnterococcus faecalis FAIR E 92
LPLANG16S rRNALactobacillus plantarum 423
LSAL16S rRNALactobacillus salvirius 241
Lba23S rRNALactobacillus acidophilus (cluster A1)
Lbg23S rRNALactobacillus gasseri (cluster B1)
Lbj23S rRNALactobacillus johnsonii (cluster B2)
LSPotu9468-999S-*-Lsp-999-a-A-2016S rRNALachnospiraceae OTU_9468
LSPotu9468-1259S-*-Lsp-1259-a-A-2016S rRNALachnospiraceae OTU_9468
Bacto1080S-*-Bacto-1080-a-A-1816S rRNABacteroides, Prevotella, and Porphyromonas
Enter1432S-G-Enter-1432-a-A-1516S rRNAenteric group (Enterobacteriales)
Lacto722S-G-Lacb-0722-a-A-2516S rRNALactobacillus group
Ceut705S-*-Ceut-0705-a-A-2116S rRNACoprococcus eutactus
Chis150S-*-Chis-0150-a-A-2316S rRNAmost of the Clostridium histolyticum group (Clostridium cluster I and II)
LSPotu11021-1448S-*-Lsp-1448-a-A-1816S rRNALachnospiraceae OTU_11021
Law116S rRNALawsonia intracellularis
Lab158S-G-Lab-0158-a-A200S rRNALactobacilli Enterococci
Rrec58416S rRNARoseburia
Prop85316S rRNAClostridial cluster IX
Bx183S-S-B.x-0183-a-A-1816S rRNABrachyspira aalborgi clusters 2 and 3
Aalborgi183S-S-B.aalborgi-0183-a-A16S rRNABrachyspira aalborgi cluster 1
Erec834S-S-Erec-0834-a-A-1816S rRNAEubacterium rectale
Erec838S-S-Erec-0838-b-A-2016S rRNAEubacterium rectale
Etor727S-S-Etor-0727-a-A-1816S rRNAEubacterium tortuosum
Etor129S-S-Etor-0129-b-A-1816S rRNAEubacterium tortuosum
Lbd23S rRNALactobacillus delbrueckii subsp.
EC 1531L-S-Eco-1531-a-A-2123S rRNAEscherichia coli BJ4
Laci6616S rRNALactobacillus acidophilus
Lfer6616S rRNA Lactobacillus fermentum
Lpla6716S rRNALactobacillus plantarum
Lrum6716S rRNALactobacillus ruminis
Lreu9216S rRNALactobacillus reuteri
Lbre9016S rRNALactobacillus brevis
Lcarh23S rRNALactobacillus casei/rhamnosus
Lpcar23S rRNALactobacillus casei/paracasei/rhamnosus
Ldel23S rRNALactobacillus delbrueckii
Lpar23S rRNALactobacillus paracasei
Lsak23S rRNALactobacillus sakei
Eubac576S-St-xxxx-0576-a-A-1816S rRNAEubacterium sp. Trains L1-83 and A2-194
Copr60S-St-xxxx-0060-a-A-1816S rRNACoprococcus sp. Strain L2-50
SER1410L-G-Serp-1410-a-A-1923S rRNABrachyspira
Hyo1210L-S-S.hyo-1210-a-A-1923S rRNABrachyspira hyodysenteriae
Pilosi209S-S-S.pilo-0209-a-A-1816S rRNASerpulina pilosicoli (Brachyspira pilosicoli)
Pilosi1405L-S-S.pilo-1405-a-A-2023S rRNASerpulina pilosicoli (Brachyspira pilosicoli)
Sym_Stau_30316S rRNABacteroidales clone Candidatus Vestibaculum illigatum
Ntlc439S-G-Ntlc-439-a-A-1816S rRNANitrolancetus hollandicus
Bif228S-G-Bif-228-a-A-1816S rRNABifidobacteria
Ntlc804S-G-Ntlc-804-a-A-1816S rRNANitrolancetus hollandicus
Alsym16SS-G-Burk-0642-a-A-1916S rRNABurkholderia (Alydidae gut symbionts)
MCP5216S rRNAMollicutes
CPla-116S rRNA„Termite planctomycete cluster 1“
CPla-216S rRNA„Termite planctomycete cluster 2“
CPla-316S rRNA„Termite planctomycete cluster 2“
LytiProb_433S-G-Lyti-0433-a-A-2116S rRNAgenus Lyticum
Lflag_268S-S-Lfla-0268-a-A-2316S rRNALyticum flagellatum
Lsinu_268S-S-Lsin-0268-a-A-2316S rRNALyticum sinuosum
Rick_697S-F-Rick-0697-a-A-2216S rRNARickettsiaceae
TrichoRick_142S-S-Tric-0142-a-A-2216S rRNACandidatus Trichorickettsia mobilis
GigaRick_436S-S-Giga-0436-a-A-2016S rRNACandidatus Gigarickettsia flagellata
RickFla_430S-2S-RiFla-0430-a-A-2216S rRNACandidatus Trichorickettsia mobilis and Candidatus Gigarickettsia flagellata
Pse136S-S-Pse-136-a-A-2016S rRNASome Pseudomonas populations
Pse136bS-S-Pse-136b-a-A-2016S rRNASome Pseudomonas populations
Pse910S-S-Pse-910-a-A-1816S rRNASome Pseudomonas populations
Hal180S-S-Hal-180-a-A-2216S rRNASome Halomonas populations
Elo1-1250S-S-Elo1-1250-a-A-1816S rRNATetrasphaera elongata and related clones
Tet1-823S-S-Tet1-823-a-A-1816S rRNATetrasphaera elongata-related clones
Tet1-266S-S-Tet1-266-a-A-1816S rRNATetrasphaera Clone ASM31
Tet2-842S-S-Tet2-842-a-A-1816S rRNAClones related to Tetrasphaera jenkinsii, Tetrasphaera australiensis, and Tetrasphaera veronensis
Tet2-831S-S-Tet2-831-a-A-1816S rRNATetrasphaera australiensis, Tetrasphaera veronensis, and uncultured Tetrasphaera
Tet2-892S-S-Tet2-892-a-A-1816S rRNATetrasphaera Clone ASM47
Tet2-87S-S-Tet2-87-a-A-1816S rRNAUncultured Tetrasphaera
Tet2-174S-S-Tet2-174-a-A-1816S rRNATetrasphaera jenkinsii, Tetrasphaera australiensis, Tetrasphaera veronensis, and Candidatus Nostocoida limicola
Tet3-654S-S-Tet3-654-a-A-1816S rRNA3 Uncultured Tetrasphaera
Tet3-19S-S-Tet3-19-a-A-1816S rRNATetrasphaera Clone ASM57
Str56S-S-Str-56-a-A-1816S rRNAStreptococcus spp.
Lac93S-S-Lac-93-a-A-1816S rRNALactococcus spp.
Pro60S-S-Pro-60-a-A-1816S rRNAPropionicimonas spp.
LasA3720_1281S-*-LspA-1281-a-A-2316S rRNAsubgroup A of unclassified Lachnospiraceae OTU
LasB3720_1281S-*-LspB-1281-a-A-2316S rRNAsubgroup B of unclassified Lachnospiraceae OTU
Bac16065_472S-*-Bada-0472-a-A-2416S rRNAunclassified Bacteroidales cluster S24-7 OTU
Bac3732_846S-*-Bada-0846-a-A-2416S rRNAunclassified Bacteroidales cluster S24-7 OTU
Bac11839_649S-*-Bada-0649-a-A-2316S rRNAunclassified Bacteroidales cluster S24-7 OTU
Bac15326_476S-*-Bada-0476-a-A-2316S rRNAunclassified Bacteroidales cluster S24-7 OTU
Bac13481_437S-*-Bada-0437-a-A-2216S rRNAunclassified Bacteroidales cluster S24-7 OTU
All3256_484S-*-Allb-0484-a-A-2216S rRNAsubgroup of genus Allobaculum
Baci731A_87S-*-Baci-0087-a-A-2416S rRNABacteroides acidifaciens Group-2
Baci731B_87S-*-Baci-0087-a-A-2216S rRNABacteroides acidifaciens Group-1
Rum14644A_184S-*-Ruco-0184-a-A-2316S rRNAunclassified Oscillibacter OTU
Rum14644B_64S-*-Ruco-0064-a-A-2416S rRNAunclassified Oscillibacter OTU
Rum17903_443S-*-Ruco-0443-a-A-2016S rRNAunclassified Ruminococcaceae OTU
LasA5944_580S-*-LspA-0580-a-A-2416S rRNAsubgroup A of unclassified Lachnospiraceae OTU
LasB5944_580S-*-LspB-0580-a-A-2416S rRNAsubgroup B of unclassified Lachnospiraceae OTU
Lab9057_570S-S-Lbad-0570-a-A-2316S rRNALactobacillus taiwanensis - L. johnsonii - L. gasseri group
Lab2185_87S-*-Lbre-0087-a-A-2416S rRNALactobacillus reuteri
UCB-82316S rRNAPlasticicumulans acidivorans
ULB-45016S rRNAPlasticicumulans lactivorans
UCB-12716S rRNAPlasticicumulans acidivorans
L.mars_symb116S rRNAEndosymbiont type A of Lamellibrachia anaximandri (Marsili seamount)
L.mars_symb216S rRNAEndosymbiont type B of Lamellibrachia anaximandri (Marsili seamount)
volv-83516S rRNARickettsial endosymbionts hosted by Carteria, Pleodorina, Volvox (green algae) and Diophrys appendiculata (ciliate)
help-volv116S rRNARickettsiaceae
help-volv216S rRNARickettsial endosymbionts of Carteria, Pleodorina, Volvox (green algae) and Diophrys appendiculata (ciliate)
MEVE845S-G-MEVE-0845-a-A-2116S rRNAgenus Methyloversatilis
PDD8_64416S rRNACandidatus Cochliophilus cryoturris, symbiont of Cochliopodium minus
ZMS15216S rRNAZoothamnium mariella ectosymbiont
ZMS123916S rRNAZoothamnium mariella ectosymbiont
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    • Primer
    • Probes used for FISH