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Probes targeting methanogenic archaea

Probe name Specificity
MB1Methanosarcina frisius, Methanosarcina sp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri
MB1174Methanobacterium spp., Methanobrevibacter spp., Methanosphaera spp.
MB3Methanosarcina frisius, Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri
MB310Methanobacterium spp., Methanobrevibacter spp., Methanosphaera spp.
MB4Methanosarcina thermophila, Methanosarcina barkeri
MC1109Methanococcus spp.
MG1200Methanomicrobium spp., Methanogenium spp., Methanoculleus spp., Methanospirillum spp., Methanocorpusculum spp., Methanoplanus spp.
MG3all methanogens, Halobacterium spp., Pyrococcus spp., Sulfolobus spp., Homo sapiens, Thermofilum spp., Pyrobaculum spp.
MS1Methanothrix soehngenii, Methanosaeta concilii
MS1414Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp.
MS2Methanothrix soehngenii, Methanosaeta concilii
MS5Methanothrix soehngenii, Methanosaeta concilii, Methanothrix sp. strain CALS-1, Methanothrix sp. strain PTT, Methanosaeta thermoacetophila
MS821Methanosarcina frisius, Methanosarcina spp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri, Methanoholophilus mahii, Methanophilus sp.
MSMX860Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp., Methanosaeta spp.
MX825Methanosaeta spp.
SARCI551genus Methanosarcina
SARCI645genus Methanosarcina
EURY496Methanomicrobiales group and VAL 47, VAL 1, VAL9, VAL78 clones
EURY499Methanosarcina, Methanosaeta, Methanomicrobiales groups and VAL 47,VAL 1, VAL9, VAL78 clones
MPH-730Methylophaga
MPHm-994Methylophaga marina
MB311Methanobacteriales
MB1174Methanobacteriales (minus Methanothermus)
MC504Methanocaldococcaceae(+some Methanococcaceae)
MC1109Methanococcaceae
MG1200bmost Methanomicrobiales
MS821Methanosarcina
MS1414Methanosarcina, Methanococcoides, Methanolobus
MSMX860Methanosarcinales (all Methanosarcina and Methanosaeta)
MX825some Methanosaetaceae
MX825bMethanosaetaceae subgroup
MX825cMethanosaetaceae subgroup
MX1361Methanosaetaceae
MX825bMethanosaetaceae subgroup
MX825cMethanosaetaceae subgroup
MX1361Methanosaetaceae
MG1200bmost Methanomicrobiales
MB311Methanobacteriales
MC504Methanocaldococcaceae
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  • Color codes

    • Primer
    • Probes used for FISH