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Probes targeting bacteria of medical or hygienical relevance

Probe name Specificity
ACA652 (ACA23A)Acinetobacter
ALBO34aBordetella spp., Alcaligenes spp. (sensu stricto)
Bcv13bBurkholderia vietnamensis, B. cepacia
Chls-0523Chlamydiales
DDK3Treponema sp. DDKL-3
DDK4Treponema phagedenis, DDKL-4
Eampr18Enterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus
Eamprs09Enterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus, E. sulfureus
Eas09Enterococcus asini
Eav58iEnterococcus avium
Eca18iEnterococcus casseliflavus
Ecafl09iEnterococcus casseliflavus, E. flavescens
ECC460 (ECC 461)Enterococcus columbae, Enterococcus cecorum
Ecc461Enterococcus columbae, E. cecorum
Eacdfg57Enterococcus casseliflavus, E. flavescens, E. asini, E. dispar, E. gallinarum
Ece09Enterococcus cecorum
ECE83 (6B)Enterococcus cecorum
ECE91 (ECE 92)Enterococcus cecorum
Ece92Enterococcus cecorum
Ecf459Enterococcus casseliflavus, E. flavescens, E. dispar, E. pseudoavium
Ecg191Enterococcus casseliflavus, E. flavescens
ECG192 (ECG 191)Enterococcus gallinarum, Enterococcus flavescens, Enterococcus casseliflavus
Eco09iEnterococcus columbae
ECO1167 (ECO 45A)Escherichia coli
Ecoce58Enterococcus cecorum, E. columbae
Edfm57Enterococcus durans, E. faecium, E. mundtii
EDI130 (EDI 131)Enterococcus dispar
Edi131Enterococcus asini
Edi137Enterococcus dispar
Edi38Enterococcus dispar
Edu58Enterococcus durans
Eduhi09Enterococcus durans, E. hirae
Efa54Enterococcus faecalis
Efi58Enterococcus faecium
Efl58iEnterococcus flavescens
Efs129Enterococcus faecalis
Ega09Enterococcus gallinarum
Ema58Enterococcus malodorans
Emu58Enterococcus mundtii
EMU87Enterococcus mundtii
ENC1249Enterococcus saccharolyticus, E.dispar, E.casseliflavus, E.faecium, E.flavescens, E.gallinarum, E.columbae, E.sulfureus
ENC1249-CompEnterococcus malodoratus, E.avium, E.pseudoavium, E.raffinosus, E.durans, E.mundtii, Lb.brevis, Cb.brevisimilis, Cb.divergens
Enc1259Enterococcus spp.
Enc131Enterococcus spp.
Enc145Enterococcus spp.
Enc38iEnterococcus spp., Melisococcus spp., Tetragenococcus spp., Vagococcus spp.
ENC90 (ENC 91)Enterococcus faecium, E.mundtii, E.hirae
Enc93Enterococcus hirae, E. faecium
Eps58Enterococcus pseudoavium
Era58Enterococcus raffinosus
Esa09Enterococcus saccharolyticus
Esa38Enterococcus asini, E. saccharolyticus
Esa452Enterococcus saccharolyticus
ESA88 (ESA 89)Enterococcus saccharolyticus
Esasu58Enterococcus sulfureus, E. saccharolyticus
Eso18iEnterococcus solitarius
Eso193Enterococcus solitarius
Eso58Enterococcus solitarius
Esoha57Enterococcus solitarius, Tetragenococcus halophilus
Esu18Enterococcus sulfureus
Esu90Enterococcus sulfureus
LEG226Legionellaceae
LEG705Legionella
LEGPNE1Legionella pneumophila
Myb736aMycobacterium complex
Myb736bMycobacterium complex
SSU1029Streptococcus suis
SUBU1237Burkholderia spp., Sutterella spp.
TDENTreponema denticola
TMALTreponema maltophilum
TPECTreponema pectinovorum
TRE Ioral Treponema spp. group I
TRE IIoral Treponema spp. group II
TRE IIIoral Treponema spp. group III
TRE IVoral Treponema spp. group IV
TRE Voral Treponema spp. group V
TRE VIoral Treponema spp. group VI
TRE VIIoral Treponema spp. group VII
TSOCTreponema socranskii
TVINTreponema vincentii
StemalStenotrophomonas maltophilia
BurcepBurkholderia cepacia
BurkhoBurkholderia spp.
HaeinfHaemophilus influenzae
SauStaphylococcus aureus
SpnStreptococcus pneumoniae
EntEnterobacteriaceae except Proteus spp.
KpnKlebsiella pneumoniae
CaalCandida albicans
CaglCandida (Torulopsis) glabrata
CkrusCandida krusei
Cpara651 (Cpara)Candida parapsilosis
StrStreptococcus spp.
SpyStreptococcus pyogenes
SagaStreptococcus agalactiae
Hpy-1Helicobacter pylori
ClaR1clarithromycin resistant Helicobacter pylori
ClaR2clarithromycin resistant Helicobacter pylori
ClaR3clarithromycin resistant Helicobacter pylori
ClaWTHelicobacter pylori (clarithromycin sensitve)
PceBurkholderia spp.
PPCBurkholderia spp., Sutterella wadsworthia
PseaerAPseudomonas aeruginosa
PseaerAPseudomonas aeruginosa
18Bacillus anthracis, B. cereus
19Bacillus anthracis, B. cereus
20Bacillus anthracis, B. cereus
21Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis
22Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis
23Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis
Veil223Veillonella dispar, Veillonella parvula, Veillonella atypica
AVIEnterococcus avium
ASIEnterococcus asini
CECEnterococcus cecorum
COLEnterococcus columbae
CGFEnterococcus casseliflavus, E. gallinarum, E. flavescens
DUREnterococcus durans
DISEnterococcus dispar
FMDUREnterococcus faecium, E. durans
HIREnterococcus hirae
MALEnterococcus malodoratus
MUNEnterococcus mundtii
PSEEnterococcus pseudoavium
RAFEnterococcus raffinosus
SACEnterococcus sacharolyticus
SOLEnterococcus solitarius
SULEnterococcus sulfureus
Chlae-574Chlamydiaceae
Chla-0232Chlamydia
Chlph-0583Chlamydophila
Ct-0623Chlamydia trachomatis
Cpn-0214Chlamydophila pneumoniae
Cpn-0974Chlamydophila pneumoniae
Cps-1414“Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae
Cps-1353“Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae
Bn9-658subgroup of the Parachlamydiaceae including Parachlamydia acanthamoebae (Hallaposs coccus), endosymbionts of Acanthamoebae sp. UWE25 and UWE1
ParaC-0658subgroup of the Parachlamydiaceae including Neochlamydia hartmannellae, endosymbiont of Acanthamoeba sp. UWC22
Enterbact Dsome members of the Enterobacteriaceae
Enterbact Bsome members of the Enterobacteriaceae and Vibrionaceae
Urobe63auncultured Ruminococcus obeum-like bacteria
Urobe63buncultured Ruminococcus obeum-like bacteria
ACACActinobacillus actinomycetemcomitans
B(T)AFOTannerella forsythensis (Bacteroides forsythus)
POGIPorphyromonas gingivalis
PRINPrevotella intermedia
FUSOFusobacterium spp.
VEPAVeillonella parvula
Cp1Clostridium perfringens
Cp2Clostridium perfringens
Cp3Clostridium perfringens
ARBA (23-mer)Arcobacter spp.
ARBA (27-mer)Arcobacter spp.
ARBU (24-mer)Arcobacter butzleri
Hp16S-1Helicobacter pylori
ALBO577Alcaligenes, Bordetella and close relatives
EBAC1790Enterobacteriaceae
Hpy16SHelicobacter pylori
Bfra602Bacteroides fragilis group
Bdis656Bacteroides distasonis
Chis150most of the Clostridium histolyticum group (Clostridium cluster I and II)
Lis-637Listeria spp., except L. grayi
Bmy843Bacillus
Ver620Verrucomicrobium
MIB661mouse intestinal bacteria
MIB724mouse intestinal bacteria
FNECFusobacterium necrophorum
B6subgroup of Brucella spp.
B9subgroup of Brucella spp.
B13subgroup of Brucella spp.
Staph747Staphylococcus spp.
Eca58Enterococcus casseliflavus
Edr58Enterococcus durans
Ehr58Enterococcus hirae
Efm09Enterococcus faecium
Ema58iEnterococcus malodoratus
Esasu58iEnterococcus saccharolyticus, Enterococcus sulfureus
HEL274Helicobacter sp., Wolinella sp.
HEL717Helicobacter sp., Wolinella sp.
HEP642Helicobacter hepaticus
GAN1237Helicobacter ganmani
FUNUFusobacterium nucleatum/canifelinum
EICOEikenella corrodens
CARECampylobacter rectus
ProCo1264Ruminococcus productus and relatives
Csac67Clostridium saccharogumia
Ach-221Achromobacter xylosoxidans
Alc-476Alcaligenes faecalis
Pint649Prevotella intermedia
Pnig657Prevotella nigrescens
FUS664most Fusobacterium sp.
P(T)AFOTannerella forsythensis (Bacteroides forsythus)
POGIPorphyromonas gingivalis and uncultured Porphyromonas
PRINPrevotella intermedia, Prevotella falsenii and uncultured Prevotella
Law1Lawsonia intracellularis
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    • Primer
    • Probes used for FISH