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Probes targeting sulfate-reducing microbes

Probe name Specificity
804(Dsb804)Some Desulfobacteraceae
814(Dscoc814)Few Desulfobacteraceae
cl81-644Few Desulfobacteraceae
D-acet1027r (DFACE1028)Desulfotomaculum acetoxidans
660(DBB660)some Desulfobulbus
221(DBM221)Desulfobacterium vacuolatum, D. niacini, D. autotrophicum
DCC209Desulfococcus multivorans
DCC868Desulfosarcina sp., Desulfonema spp., Desulfococcus sp., Desulfobacterium spp., Desulfobotulus sp., Desulfostipes sp., Desulfomusa sp.
DEM1164rDesulfotomaculum cluster I and other Firmicutes
DEM-RC1015rDesulfotomaculum clone sequences from rice paddy soil
Dsb220(desulfobacter)most Desulfobacter
DFM228Desulfotomaculum spp.
DNMA657some Desulfonema
129(DSB129)most Desulfobacter
DSB623Desulfobacter spp.
DSB985Desulfobacter, Desulfobacula, Desulfospira, and Desulfotignum
DSBAC355most Desulfobacterales and Syntrophobacterales
DSBO224Desulfobotulus sapovorans, Desulfovibrio fairfieldensis, and other Deltaproteobacteria
DSC193Desulfosarcina variabilis
DSD131 (DSVAE131)Desulfovibrio aestuarii
DSF672Desulfofrigus, Desulfofaba gelida, Desulfomusa hansenii
DSMA488Desulfarculus baarsii, Desulfomonile tiedjei, and Syntrophus
DSR651Some Desulfobulbaceae
DSS225Desulfosarcina and many other Desulfobacteraceae
DSS658Desulfobacteraceae and other Bacteria
DSV1154Desulfovibrio alcoholivorans, D. fructosivorans, D. burkinensis, rice field isolate F1-7b and R-SucA1
DSV1292Some Desulfovibrio and Bilophila wadsworthia
DSV214Most Desulfomicrobium
DSV407Few Desulfovibrionaceae, Desulfohalobiaceae, and Desulfonatronumaceae
Dsv683Desulfovibrionaceae, metal reducers
687(DSV687)Most Desulfovibrionales (excluding Lawsonia) and many Desulfuromonales
DSV698Some Desulfovibrio, Bilophila wadsworthia, and Lawsonia intracellularis
Dtm(a)229Desulfotomaculum cluster Ia
Dtm(bcd)230Many Desulfotomaculum cluster I and other Firmicutes
Dtm(be)152Desulfotomaculum cluster Ib and Ie
Dtm(c)428Desulfotomaculum cluster Ic
Dtm(cd)216Desulfotomaculum cluster Ic and Id
Dtm229Desulfotomaculum cluster I and other Firmicutes
SRB385 (SRB)Most Desulfovibrionales and other Bacteria
SRB385DbDesulfobacterales, Desulfuromonales, Syntrophobacterales, Myxococcales, and other Bacteria
Sval428Some Desulfobulbaceae (excluding most Desulfobulbus
SYN835Syntrophobacter, Desulforhabdus
DSM194Desulfomicrobium spp., Desulfobacterium macestii
DSM213Desulfomicrobium
DSHRE830Desulfohalobium retbaense
DSHRE995Desulfohalobium retbaense
DSHRE1243Desulfohalobium retbaense
DFMI227aDesulfotomaculum putei, Dfm. gibsoniae, Dfm. geothermicum, Dfm. thermosapovorans, Dfm. thermoacidovorans, Dfm. thermobenzoicum, Dfm. thermoacetoxidans, Dfm. australicum, Dfm. kuznetsovii, Dfm. thermocisternum, Dfm. luciae, Sporotomaculum hydroxybenzoicum
DFMI227bDesulfotomaculum aeronauticum, Dfm. nigrificans, Dfm. reducens, Dfm. ruminis, Dfm. sapomandens, Dfm. halophilum
DFMI210some Desulfotomaculum spp. of clusters Ic and Id
DFMI229some Desulfotomaculum spp. of clusters Ib, Ic, and Id
DFMIa641Desulfotomaculum spp. (cluster Ia)
DFMIb726Desulfotomaculum spp., Sporotomaculum spp. (cluster Ib)
DFMIc841Desulfotomaculum spp. (cluster Ic)
DFMIc1012Desulfotomaculum spp. (cluster Ic)
DFMIc1119Desulfotomaculum spp. (cluster Ic)
DFMIc1138Desulfotomaculum spp. (cluster Ic)
DFMId436Desulfotomaculum spp. (cluster Id)
DFMId625Desulfotomaculum spp. (cluster Id)
DFMId996Desulfotomaculum spp. (cluster Id)
DFMId1117Desulfotomaculum spp. (cluster Id)
DFACE199Desulfotomaculum spp. (cluster Ie)
DELTA495aMost Deltaproteobacteria and most Gemmatimonadetes
DELTA495bsome Deltaproteobacteria
DELTA495csome Deltaproteobacteria
DSB706Most Desulfobulbaceae and Thermodesulforhabdus
DSB230Desulfotalea-Desulforhopalus-Desulfocapsa-Desulfofustis lineage
DSTAL131Desulfotalea spp.
DSTAL213Desulfotalea spp.
DSTAL645Desulfotalea spp.
DSTAL732Desulfotalea spp.
DSTAL835Desulfotalea spp.
DSRHP185Desulforhopalus spp.
DSBB228Desulfobulbus spp.
DSBB660Desulfobulbus spp.
DSB986Desulfobacter spp., Desulfobacula sp., Desulfobacterium sp., Desulfospira sp., Desulfotignum sp.
DSB1030Desulfobacter spp., Desulfobacula sp., Desulfobacterium sp., Desulfospira sp., Desulfotignum sp.
DSB1240Desulfobacter spp., Desulfotignum sp.
DSB623aDesulfobacter curvatus, Dsb. halotolerans, Dsb. hydrogenophilus, Dsb. postgatei, Dsb. Vibrioformis
DSB623bDesulfobacter sp. BG8, Dsb. sp. BG23
DSBLA623Desulfobacter latus
DSBACL143Desulfobacula spp.
DSBACL225Desulfobacula spp.
DSBACL317Desulfobacula spp.
DSBACL1268Desulfobacula spp.
DSBACL1434Desulfobacula spp.
DSB674Desulfofrigus spp., Desulfofaba gelida, Desulfomusa hansenii
DSB220Desulfobacterium niacini, Dsbm. vacuolatum, Dsbm. autotrophicum, Desulfofaba gelida
DSBM1239Desulfobacterium niacini, Dsbm. vacuolatum, Dsbm. autotrophicum
DSFRG211Desulfofrigus spp.
DSFRG445Desulfofrigus spp.
DSFRG1030Desulfofrigus spp.
DSSDBM194Desulfosarcina variabilis, Desulfobacterium cetonicum
DSSDBM217Desulfosarcina variabilis, Desulfobacterium cetonicum
DSSDBM998Desulfosarcina variabilis, Desulfobacterium cetonicum
DSSDBM1286Desulfosarcina variabilis, Desulfobacterium cetonicum
DSBMIN218Desulfobacterium indolicum
DSNISH179Desulfonema ishimotonii
DSNISH442Desulfonema ishimotonii
DSNISH1001Desulfonema ishimotonii
DSN658Desulfonema limicola, Dsn. magnum
DSBOSA445Desulfobotulus sapovorans
DSMON95Desulfomonile spp.
DSMON1421Desulfomonile spp.
SYBAC986Desulfovirga spp., Desulforhabdus spp., Syntrophobacter spp.
DSACI175Desulfacinum spp.
DSACI207Desulfacinum spp.
TDRNO448Thermodesulforhabdus norvegica
TDRNO1030Thermodesulforhabdus norvegica
TDRNO1443Thermodesulforhabdus norvegica
DSV686Most Desulfovibrionales and Desulfuromonadales
DSV698Desulfovibrio caledoniensis, Dsv. dechloracetivorans, Dsv. profundus, Dsv. aespoeensis, Dsv. halophilus, Dsv. gracilis, Dsv. longus, Dsv. salexigens, Dsv. zosterae, Dsv. bastinii, Dsv. fairfieldensis, Dsv. intestinalis, Dsv. piger, Dsv. desulfuricans, Dsv
DVDAPC872Desulfovibrio caledoniensis, Dsv. dechloracetivorans, Dsv. profundus, Dsv.aespoeensis
DVHO130Desulfovibrio halophilus, Dsv. oxyclinae
DVHO733Desulfovibrio halophilus, Dsv. oxyclinae
DVHO831Desulfovibrio halophilus, Dsv. oxyclinae
DVHO1424Desulfovibrio halophilus, Dsv. oxyclinae
DVAA1111Desulfovibrio africanus, Dsv. aminophilus
DVGL199Desulfovibrio gracilis, Dsv. longus
DVGL445Desulfovibrio gracilis, Dsv. longus
DVGL1151Desulfovibrio gracilis, Dsv. longus
DVGL1421Desulfovibrio gracilis, Dsv. longus
DSV820Desulfovibrio salexigens, Dsv. zosterae, Dsv. fairfieldensis, Dsv. intestinalis, Dsv. piger, Dsv. desulfuricans
DVSZ849Desulfovibrio salexigens, Dsv. zosterae
DVIG448Desulfovibrio gabonensis, Dsv. indonesiensis
DVIG468Desulfovibrio gabonensis, Dsv. indonesiensis
DSV651Desulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis, Dsv. inopinatus
DVFABS153Desulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis
DVFABS653Desulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis
DVFABS1351Desulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis
DVLVT139Desulfovibrio termitidis, Dsv. longreachensis, Dsv. vulgaris
DVLVT175Desulfovibrio termitidis, Dsv. longreachensis, Dsv. vulgaris
DVLT131Desulfovibrio termitidis, Dsv. longreachensis
DVLT986Desulfovibrio termitidis, Dsv. longreachensis
DVLT1027Desulfovibrio termitidis, Dsv. longreachensis
DFACE438Desulfotomaculum spp. (cluster Ie)
DFACE995Desulfotomaculum spp. (cluster Ie)
DFACE1436Desulfotomaculum spp. (cluster Ie)
DFMIf126Desulfotomaculum spp. (cluster If)
DFMII1107Desulfosporosinus spp., Desulfotomaculum auripigmentum (cluster II)
DFMII1281Desulfosporosinus spp., Desulfotomaculum auripigmentum (cluster II)
TDSV601Thermodesulfovibrio spp.
Tdsulfo848 (TDSV849)Most Thermodesulfovibrio and some Magnetobacterium
TDSV1326Thermodesulfovibrio spp.
TDSBM1282Thermodesulfobacterium spp., Geothermobacterium sp.
TDSBM353Thermodesulfobacterium spp.
TDSBM652Thermodesulfobacterium spp.
ARGLO37Archaeoglobus spp.
ARGLO276Archaeoglobus spp.
ARGLO576Archaeoglobus spp.
ARGLO972Archaeoglobus spp.
Tsrda641Desulfobacteraceae DGGE clone T1
Tsrda644Desulfobacteraceae DGGE clone T1
Edsrb656Desulfobacteraceae DGGE clone E2
SYBAC697Desulforhabdus spp., Desulfovirga spp., Syntrophobacter spp.
SYBAC587aUncultured Syntrophobacter-related bacteria (Schlöppnerbrunnen I soil clones SbISybac13, 15, and 19 Schlöppnerbrunnen II soil clones SbIISybac12-1, 1-2, 3-2, and 13-2)
SYBAC587bUncultured Syntrophobacter-related bacteria (Schlöppnerbrunnen I soil clones SbISybac16 Schlöppnerbrunnen II soil clones SbIISybac25-1, 6-2, and 8-2)
DSMON999Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2, 3, 4, 5, and 8 Cadagno Lake clones 618, 624, 626, 650, and 651)
DSMON1283Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2, 3, 4, 5, and 8)
DSMON447Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon3, 5, and 8)
DSMON468aUncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon3, 5, and 8)
DSMON446Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2 and 4)
DSMON468bUncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2 and 4)
OalgDEL136Deltaproteobacterial symbiont of Olavius algarvensis
DSV (DSV321)Some Desulfovibrionaceae, Desulfomicrobiaceae, Desulfohalobiaceae, and other Bacteria
DSC213Desulfocapsa thiozymogenes
DSC441Few Desulfocapsa
SRB441Few Desulfobulbaceae
DsmA455Desulfomonile-related Lake Cadagno clones 618, 624, 626, and 651
DsmB455Desulfomonile-related Lake Cadagno clone 650
Ih820Desulfotomaculum subcluster Ih (Pelotomaculum and Cryptanaerobacter)
DSS449Some Desulfosarcina
DSS138Few Desulfobacteraceae
DSR1256Few Desulfobulbaceae
Dblb1243Desulfobacterium catecholicum-related strains LacK1, LacK4 and LacK9
Dcap1031Few Desulfocapsa including strain LacK10
Dblb1032Desulfobacterium catecholicum and related strains LacK1 and LacK9
Dsr186Desulfobacterium catecholicum and related strains LacK1 and LacK9
DSV185Desulfovibrio acrylicus
DSV445Desulfovibrio strain EtOHK3
DSV64Desulfovibrio strain EtOHK2
OcraDEL1Deltaproteobacterial symbiont 1 of Olavius crassitunicatus
OcraDEL2Deltaproteobacterial symbiont 2 of Olavius crassitunicatus
OcraDEL3Deltaproteobacterial symbiont 3 of Olavius crassitunicatus
DSBAC357Most Desulfobacteraceae and Syntrophobacteraceae
DSV827members of the genus Desulfovibrio
DSBA1017Desulfobacca acetoxidans
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    • Probes used for FISH