Microarray details
| Array name | Freshwater Sediment-Microarray |
| Array Description | Oligonucleotide microarray (microchip) for characterization of bacterial communities in freshwater sediments. The microarray contains 70 16S rRNA-targeted oligonucleotides of parallel and hierarchical specificity designed according to the multiple probe concept. |
| Array technique | Oligonucleotide probes with a 6 polyadenosine triphosphate spacer-element and amino-modification at the 5'-terminal end were spotted on GAPS II aminosilane-coated glass slides using a SpotArray24 spotting device with TeleChem Stealth pins. |
| Reference | A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Peplies J, Lachmund C, Glöckner FO, Manz W. Applied and environmental microbiology. 2006. |
| Probename | Name (Alm et al.) |
|---|---|
| ACA652 (ACA23A) | S-G-Acin-0652-a-A-18 |
| ALF968 | |
| Am445 | S-F-aMtr-0445-a-A-28 |
| Am976 | S-F-aMtr-0976-a-A-20 |
| ARCH915 (ARC915) | S-D-Arch-0915-a-A-20 |
| AT1458 | |
| Azo1251 | |
| BAC303 | S-*-Bacto-0303-a-A-17 |
| BONE23A | |
| BTWO23A | |
| CF319a | |
| CF319b | |
| CFB286 | |
| CYA361 | |
| 221(DBM221) | S-G-Dsbm-0221-a-A-20 |
| DSMA488 | |
| DSS658 | S-*-Dsb-0658-a-A-18 |
| DSV1292 | S-*-Dsv-1292-a-A-18 |
| 687(DSV687) | S-F-Dsv-0687-a-A-16 |
| EUB338 (Bact338) (bacterial) | S-D-Bact-0338-a-A-18 |
| EUB338 II (SBACT P 338) | S-*-BactP-0338-a-A-18 |
| EUB338 III (SBACT V 338) | S-*-BactV-0338-a-A-18 |
| LEG705 | |
| LGC354A | |
| LGC354B | |
| LGC354C | |
| NIT3 | S-G-Nbac-1035-a-A-18 |
| Nsm156 | S-G-Nsm-0155-a-A-19 |
| Nso1225 | S-F-bAOB-1224-a-A-20 |
| Nso190 | S-F-bAOB-0189-a-A-19 |
| Ntspa662 | S-G-Ntspa-662-a-A-18 |
| PAR651 | S-G-Parc-0651-a-A-18 |
| PLA46 | S-P-Planc-0046-a-A-18 |
| Ppu56a | |
| SRB385 (SRB) | S-*-Srb-0385-a-A-18 |
| SRB385Db | |
| UNIV1390 | S-*-Univ-1390-a-A-18 |
| Str | |
| Pae997 | |
| NEU | S-*-Nsm-0651-a-A-18 |
| Amx820 | S-*-Amx-0820-a-A-22 |
| Enterbact D | |
| NSR826 | |
| NSR1156 | |
| EUK1195 | |
| III1421 | |
| BLS1295 | |
| EURY496 | |
| EURY499 | |
| EURY514 | |
| LDI | |
| SNA | |
| ALBO577 | |
| ENT183 | |
| Strc493 | S-*-Strc-0493-a-A-19 |
| LGC | |
| Clost I | |
| AMAR 839 | S-G-AMAR-0839-a-A-22 |
| LGC353b | |
| Flavo1004 | S-St-Iso8-1004-a-A-18 |
| CLOBU1022 | S-S-Cl.bu.-1022-a-A-18 |
| AERO1244 | S-G-Aero-1244-a-A-21 |
| HGC236 | |
| Ppu646 | S-G-Ppu-0646-a-A-18 |
| MYBM1171 | S-G-Mybm-1171-a-A-18 |
| AcI-840-1 (AC840a) | |
| AcI-840-2 (AC840b) | |
| AcI-1214 | |
| AQUA841 | S-G-Aqua-0841-a-A-21 |
Color codes
- Primer
- Probes used for FISH
