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Microarray details

Array name SRP-PhyloChip
Array Description Low-density oligonucleotide microarray (microchip) for identification of all recognized lineages of sulfate-reducing prokaryotes (SRPs). The microarray contains 142 different 18-mer oligonucleotide probes of parallel and hierarchical specificity (multiple probe concept) targeting the 16S rRNA (gene) of all bacterial and archeal SRPs.
Array technique Oligonucleotide probes with a 15 dTTP spacer-element and amino-modification at the 5'-terminal end were spotted on aldehyde-group coated glass slides using a contact-spotting device.
Reference Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J, Schleifer KH, Wagner M. Applied and environmental microbiology. 2002.
Probename Name (Alm et al.)
804(Dsb804)S-*-Dsb-0804-a-A-18
D-acet1027r (DFACE1028)S-S-Df.ace-1028-a-A-18
DCC209S-S-Dcc.mv-0209-a-A-18
DCC868S-*-Dsb-0868-a-A-18
DSBAC355
DSC193S-*-Dsb-0193-a-A-18
DSD131 (DSVAE131)S-S-Dsv.ae-0131-a-A-18
DSR651S-*-Dsb-0651-a-A-18
DSS658S-*-Dsb-0658-a-A-18
DSV1292S-*-Dsv-1292-a-A-18
EUB338 (Bact338) (bacterial)S-D-Bact-0338-a-A-18
EUB338 II (SBACT P 338)S-*-BactP-0338-a-A-18
EUB338 III (SBACT V 338)S-*-BactV-0338-a-A-18
LGC354A
LGC354B
LGC354C
SRB385 (SRB)S-*-Srb-0385-a-A-18
SRB385Db
SYN835
UNIV1389aS-D-Univ-1389-a-A-18
UNIV1389bS-D-Univ-1389-b-A-18
UNIV1389cS-D-Univ-1389-c-A-18
DSM194S-G-Dsm-0194-a-A-18
DSM213S-G-Dsm-0213-a-A-18
DSHRE830S-S-Dsh.re-0830-a-A-18
DSHRE995S-S-Dsh.re-0995-a-A-18
DSHRE1243S-S-Dsh.re-1243-a-A-18
DFMI227aS-*-DfmI-0227-a-A-18
DFMI227bS-*-DfmI-0227-b-A-18
DFMI210S-*-DfmI-0210-a-A-18
DFMI229S-*-DfmI-0229-a-A-18
DFMIa641S-*-DfmIa-0641-a-A-18
DFMIb726S-*-DfmIb-0726-a-A-18
DFMIc841S-*-DfmIc-0841-a-A-18
DFMIc1012S-*-DfmIc-1012-a-A-18
DFMIc1119S-*-DfmIc-1119-a-A-18
DFMIc1138S-*-DfmIc-1138-a-A-18
DFMId436S-*-DfmId-0436-a-A-18
DFMId625S-*-DfmId-0625-a-A-18
DFMId996S-*-DfmId-0996-a-A-18
DFMId1117S-*-DfmId-1117-a-A-18
DFACE199S-S-Df.ace-0199-a-A-18
ARCH917S-D-Arch-0917-a-A-18
DELTA495aS-C-dProt-0495-a-A-18
DELTA495bS-*-dProt-0495-b-A-18
DELTA495cS-*-dProt-0495-c-A-18
NTSPA714S-*-Ntspa-714-a-A-18
DSB706S-*-Dsb-0706-a-A-18
DSB230S-*-Dsb-0230-a-A-18
DSTAL131S-G-Dstal-0131-a-A-18
DSTAL213S-G-Dstal-0213-a-A-18
DSTAL645S-G-Dstal-0645-a-A-18
DSTAL732S-G-Dstal-0732-a-A-18
DSTAL835S-G-Dstal-0835-a-A-18
DSRHP185S-*-Dsrhp-0185-a-A-18
DSBB228S-G-Dsbb-0228-a-A-18
DSBB660S-G-Dsbb-0660-a-A-18
DSB986S-*-Dsb-0986-a-A-18
DSB1030S-*-Dsb-1030-a-A-18
DSB1240S-*-Dsb-1240-a-A-18
DSB623aS-*-Dsb-0623-a-A-18
DSB623bS-*-Dsb-0623-b-A-18
DSBLA623S-S-Dsb.la-0623-a-A-18
DSBACL143S-G-Dsbacl-0143-a-A-18
DSBACL225S-G-Dsbacl-0225-a-A-18
DSBACL317S-G-Dsbacl-0317-a-A-18
DSBACL1268S-G-Dsbacl-1268-a-A-18
DSBACL1434S-G-Dsbacl-1434-a-A-18
DSB674S-*-Dsb-0674-a-A-18
DSB220S-*-Dsb-0220-a-A-18
DSBM1239S-*-Dsbm-1239-a-A-18
DSFRG211S-G-Dsfrg-0211-a-A-18
DSFRG445S-G-Dsfrg-0445-a-A-18
DSFRG1030S-G-Dsfrg-1030-a-A-18
DSSDBM194S-*-DssDbm-0194-a-A-18
DSSDBM217S-*-DssDbm-0217-a-A-18
DSSDBM998S-*-DssDbm-0998-a-A-18
DSSDBM1286S-*-DssDbm-1286-a-A-18
DSBMIN218S-S-Dsbm.in-0218-a-A-18
DSNISH179S-S-Dsn.ish-0179-a-A-18
DSNISH442S-S-Dsn.ish-0442-a-A-18
DSNISH1001S-S-Dsn.ish-1001-a-A-18
DSN658S-*-Dsn-0658-a-A-18
DSBOSA445S-S-Dsbo.sa-0445-a-A-18
DSMON95S-*-Dsmon-0095-a-A-18
DSMON1421S-*-Dsmon-1421-a-A-18
SYBAC986S-*-Sybac-0986-a-A-18
DSACI175S-G-Dsaci-0175-a-A-18
DSACI207S-G-Dsaci-0207-a-A-18
TDRNO448S-S-Tdr.no-0448-a-A-18
TDRNO1030S-S-Tdr.no-1030-a-A-18
TDRNO1443S-S-Tdr.no-1443-a-A-18
DSV686S-*-Dsv-0686-a-A-18
DSV698S-*-Dsv-0698-a-A-18
DVDAPC872S-*-Dv.d.a.p.c-0872-a-A-18
DVHO130S-*-Dv.h.o-0130-a-A-18
DVHO733S-*-Dv.h.o-0733-a-A-18
DVHO831S-*-Dv.h.o-0831-a-A-18
DVHO1424S-*-Dv.h.o-1424-a-A-18
DVAA1111S-*-Dv.a.a-1111-a-A-18
DVGL199S-*-Dv.g.l-0199-a-A-18
DVGL445S-*-Dv.g.l-0445-a-A-18
DVGL1151S-*-Dv.g.l-1151-a-A-18
DVGL1421S-*-Dv.g.l-1421-a-A-18
DSV820S-*-Dsv-0820-a-A-18
DVSZ849S-*-Dv.s.z-0849-a-A-18
DVIG448S-*-Dv.i.g-0448-a-A-18
DVIG468S-*-Dv.i.g-0468-a-A-18
DSV651S-*-Dsv-0651-a-A-18
DVFABS153S-*-Dv.f.a.b.s-0153-a-A-18
DVFABS653S-*-Dv.f.a.b.s-0653-a-A-18
DVFABS1351S-*-Dv.f.a.b.s-1351-a-A-18
DVLVT139S-*-Dv.l.v.t-0139-a-A-18
DVLVT175S-*-Dv.l.v.t-0175-a-A-18
DVLT131S-*-Dv.l.t-0131-a-A-18
DVLT986S-*-Dv.l.t-0986-a-A-18
DVLT1027S-*-Dv.l.t-1027-a-A-18
DFACE438S-S-Df.ace-0438-a-A-18
DFACE995S-S-Df.ace-0995-a-A-18
DFACE1436S-S-Df.ace-1436-a-A-18
DFMIf126S-*-DfmIf-0126-a-A-18
DFMII1107S-*-DfmII-1107-a-A-18
DFMII1281S-*-DfmII-1281-a-A-18
TDSV601S-*-Tdsv-0601-a-A-18
Tdsulfo848 (TDSV849)S-*-Tdsulfo-0848-a-A-18 (S-*-Tdsv-0849-a-A-18)
TDSV1326S-*-Tdsv-1326-a-A-18
TDSBM1282S-P-Tdsbm-1282-a-A-18
TDSBM353S-*-Tdsbm-0353-a-A-18
TDSBM652S-*-Tdsbm-0652-a-A-18
ARGLO37S-G-Arglo-0037-a-A-18
ARGLO276S-G-Arglo-0276-a-A-18
ARGLO576S-G-Arglo-0576-a-A-18
ARGLO972S-G-Arglo-0972-a-A-18
SYBAC697S-*-Sybac-0697-a-A-18
SYBAC587aS-*-Sybac-0587-a-A-18
SYBAC587bS-*-Sybac-0587-b-A-18
DSMON999S-*-Dsmon-0999-a-A-18
DSMON1283S-*-Dsmon-1283-a-A-18
DSMON447S-*-Dsmon-0447-a-A-18
DSMON468aS-*-Dsmon-0468-a-A-18
DSMON446S-*-Dsmon-0446-a-A-18
DSMON468bS-*-Dsmon-0468-b-A-18
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  • Color codes

    • Primer
    • Probes used for FISH