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Microarray details

Array name Taxonomic 16S rRNA microarray
Array Description Taxonomic 16S rRNA microarray for comparison of rhizobacterial community composition. The microarray contains 1033 probes and targets 19 bacterial phyla.
Array technique
Reference Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease. Kyselková M, Kopecký J, Frapolli M, Défago G, Ságová-Marecková M, Grundmann GL, Moënne-Loccoz Y. The ISME journal. 2009.
Probename Name (Alm et al.)
Azira1
Azama4
Azama7
Azama8
Azobr1
Azoli1
Azolibr1
Rhira1
Rhira2
Rhira3
Rhira7
Rhizo3
Rhizo4
Sino1
Ochro
Beij2
Bkmuvian
Bktrop1
Bktrop2
Bktrop3
Bktrop4
Bkand
Hefri2
Hefri3
Hefri4
Heser1
Heser3
Janaga2
Janaga3
Jant1
Acave1
Acave3
Acave4
Conide2
Delac2
Delac3
Delf1
HyMa2
Hypal1
Hypal2
Aldef5
Alfae1
Alfae2
Alfae5
Alfae7
Achrom2
Achrom3
Achrom4
Rasol1
Chrom4
Metphi1
Metphi2
Metphi3
MetMet1
Metvor2
Metvor3
Metmic1
Metmic2
Metmic5
Metmic6
Metmic7
Metmic8
Metmic9
Metsar4
Metsar5
Metsar7
enter5
enter6
enter3
enter4
Xenem1
Xenem2
Xenem3
Xenem4
Xenem5
Xenem6
Xenem7
Xebe3
Pagg5
Pagg6
Kgra3
Raqu2
RaSef2
RaSef4
Serr1
CitBut1
CitBut2
CitBut3
Eamy4
Eamy5
Eper1
Ptol1
Pechr10
Pechr6
Pechr8
Sal1
Sapath3
Sapath4
Vibr1
Franc1
FraWol1
Frphi1
Frphi2
Frtul3
Frtul4
Frtul7
Psres
Pscit1
Psflav4
Pslut1
Pslut2
Psole1
Psole2
Azovi2
AzoAzo3
Azobei
Thio3
Thio4
Xant2
Xano3
Xano4
Sten12
Sten13
Sten14
Sten15
Sten4
SteXan2
SteXan3
Lyso2
Aesal1
Aero2
MyxCor1
MyxCor11
MyxCor12
MyxCor14
MyxCor15
MyxCor17
MyxCor18
MyxCor19
MyxCor21
MyxCor22
Coralc4
Coralc8
Corallc10
Corallc5
Corallc6
Corallc9
Anmxb5
Anmxb6
StigMyx9
Polyang10
Polyang2
Chond2
Chond5
Chond6
Chond7
un3Chon2
un3Chon3
un3Chon5
un43Chon10
un43Chon12
un43Chon13
un43Chon4
un43Chon7
un43Chon8
un43Chon9
un4Chon4
Halian2
Halian3
Halian5
Nancs1
Nancs7
Nancs8
CystbSUB1
CystbSUB2
CystArch1
CystArch2
CystArch3
Cystb1
Cystb3
Cystb6
Cystb8
CystMel2
CystMel3
unCyst1
unCyst2
unCyst3
Bac25
Bacsub12
Bacsub7
Bacsub9
Bacaga2
Bacaga3
Bacazo3
Bacbad2
Bacbae2
Bacbae3
Bacben1
Baccer2
Baccer7
Bac10
Baccer8
Baccir1
Baccir3
Baccla5
Baccoa1
Baccoh2
Baccoh3
Baccoh4
Bacfara1
Bacfara2
Bacfor1
Bacfir5
Bacfle1
Bacfun 3
Bacfun 6
Bachor1
Bachrt1
Bacjeo2
Bacjeo5
Bacjeo6
Backru5
Bacmac4
Bacmar1
Bacmet1
Bacmet2
Bacmyc1
Bacmyc3
Bacoler1
Bacpich2
Bacpich3
Bacpsc 3
Bacpsf1
Bacpsf3
Bacpum2
Bacsmi1
Bacsmi4
Bacsmi5
Bacsprt1
Bacsprt2
Bacmis9
Bacved 3
Bacved 4
PeBr
Paen5
Paen6
Ppop4
Ppotu
Pnaf1
Pazma1
Pbo1maq
Pbo1
Pbo2
Paeni7-1
Palv
Palv2
Pamy3
Behi1
Bchikob2
Pchfabo1
Pchib2
Pchinapi
Pcukoho1
Pdae1
Pdae2
Phon1
Phon2
Pkor1
Pkor2
Pkol3
Plac
Plar4
Plen2
Pnem1
Pnem2
Pnem3
Pnem4
Pnem6
Pnem7
Pval2
Pvalnaf
Pvalnafchin2
Pvel4
Pvelch1
Pvelch2
Pxya
Palgi2
PalgiG1
PalgiG3
Brbac18
Brbac2
Brbac3
Brbac4
Brbac5
Brbac6
Brbac8
ChryD1
ChryD2
ChryD3
ChryD4
ChryD5
ChryD6
ChryD7
Chrygl1
Chrygl3
Chryme1
ChrysR
Artb1
Artb2
Artb3
Micco9
Frank11
Frank13
Frank15
Frank16
Kisp5
Kisp6
Kisp7
Kisp8
Kisp9
Stsp10
Stsp16
Stsp19
Cornba11
Cornba13
Cornba5
Cornba8
Dietz4
Dietz6
Dietz7
Dietz8
Sacchps10
Sacchps14
Agrm4
Agrm5
Agrm7
MicmFAM13
MicmFAM15
MicmFAM6
Micm3
Nono1
Tetsp3
Terrb1
Terrb3
Terrb5
Terrb7
Them15
Them16
Them17
Thebi10
Thebi7
Bifid5
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  • Color codes

    • Primer
    • Probes used for FISH