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Microarray details

Array name Soil microbial community phylochip
Array Description 16S rRNA microarray (phylochip) for analysis and comparison of microbial community composition of soils. The microarray is contains 575 probes targeting bacterial diversity at various taxonomic levels from phyla to species.
Array technique
Reference Antibiotic-resistant soil bacteria in transgenic plant fields. Demanèche S, Sanguin H, Poté J, Navarro E, Bernillon D, Mavingui P, Wildi W, Vogel TM, Simonet P. Proceedings of the National Academy of Sciences of the United States of America. 2008.
Probename Name (Alm et al.)
Beta3
Burcep
Bkhglum
Bkhgram1
Aceto2
Aceto3A
Aceto3B
Ace2
Acidomonas2
Aceti1
Asia2
Acidocella1
Afipia2
ACD840
Acdp821
Oxy1
Diaz4
Gludi
Sac1
Ruber2
Glob2
Bra1
Lipo1
Rub1
Rub2
Orienta3
Orienta5
Hypho3
Mari1
Para1
Undic2
Sphingo4
Sub1
Cap1
Caulo1A
Caulo1B
Caulo2
Caubact1
Asti1
Bre1
Rzbc1247
Rzbc820
AgroAT41m
AgrRubi
Vit2
C58-1007
AgrLarry
AF310-1010
Rhizo1A
Rhizo1B
Gal
Galli1
Rhihain
Sino2
Xinji
Kummero2
Adh
Barto1
Bruce3B
Ochro2
Ochro3
Phyllobact
Msrhuak
Methylocyst1
Methy5
Methy7
Nitrobacte
Rhodopseud
Elk1
Nitro1
Blastobact
Hypho5
Blastochlo6
Pedo2
Cau2
Methylobact2
BET940
Beta2
Bkhgram2
Bkhvand
Thau2
Ni2
Nitcom2b
Nitcryo1
Nitcryo2
Nithalo1
Nithalo2
Nitmar2
Comtes2
RhizoLCSA1
Alca1b
Eikcor1
Methphi5
Car1
ACT465a
Thio2
Mor1
Psy1
marino
Ocea1
Ocea2
Methy1A
Methy1B
Methmo6
Met1
Methmi3
Ecoli1b
Bren2
Buch1
Ewin1
Kleb1
Rah1
Ser1
Yer1
Cardio1
Cyclo5
Fran
PseuAlc3
Pseu11
Pseu19
Pseu24
Pseu12
Pseu15
PseuStu1
Pseu33
PseuTol
PseuSV5
PseuBC4-6
PseuISO1-2
PseuSag1
Pseu34
Pseu35
Pseu36
NmV
Nitmob
Allo1
Allo4
Chrom1
Thio3H
Thiocys2
alter1
alter2
psalter1
psalter2
Xancam
Lysant
Geo1A
Geo1B
DVLVT222f
DVGL228e
Ep1
Epsi1
Epsi3
Alvi2
Alvi3
Alvi4
Alvi5
Arco1
Arco2
Sulfu1
Sulfu3
Heli2
Heli4
Heli5
Heli6
HeliFel1
HeliMur1
HeliPull1
HelPull3
HeliPyl2
HeliPyl3
Wolin2
Anab1
nostoc3
Calo1
Calo2
cylindro2
cylindro3
gloe2
lyng2
micys1
micys2
micys3
oscil1
phor2
pleur1
pleur2
pleur3
prochlo1
prochlo2
Systic2
thia1
tricho2
tricho3
chlorob1
Bacil16
Bacil60
Bacsub2
Bacmega1
BaCoa1
Paeni4-2
Paeni1-2
Paeni7-2
Paeni7-3
Paeni5-2
Lacto1
Lacto10
Lacto15
Lacto26
Lacto39
Lacto41
Lacto42
Lacto60
Lacto61
Lacto73
Lacto87
Lacto90
Lacto108
Lacto99
Enter2
Lactococcus4
Strepto1
Strepto10
Strepto19
Strepto27
Tab993
buty1
Sele1
Sele4
Sele13
Sporo2
Acida2
Acida4
Diali3
Diali5
Diali14
Mega2
Mega4
Mega8
Mega11
Phasco4
Phasco8
Eubac3
Eubac4
Mogi1
Mogi12
Myco11
Myco2
Myco43
Myco57
Myco81
Spiroplas2
Spiroplas4
Spiroplas15
Achol3
Plancto1
Plancto16
Plancto17
Plancto10
Plancto13
Plancto14
Plancto15
Plancto9
Plancto12
Verru4
Prevo3
Bacte7
Rik6
Porp15
Dysg3
Flavo2
Berg3
Ornit3
Ornit7
Psyf15
Psys2
Chrys2
Blatta1
Blatta2
Sapro1
Sapro2
Cyclo1
Hyme3
Hyme16
Micro2
Micro14
Run4
Spiro5
Spiro7
Spiro10
Rhodo3
MPA60
Actino4
Arthro-clustB3
StreptomycesA6
StreptomycesB3
StreptomycesC7
StreptomycesC17
StreptomycesD7
Corybo1
Corybo2
Coryglu1
Coryjei1
CoryVar1
Coryxer1
Coryxer2
Noc1
Noc2
NocAfri1
NocBra1
NocBra2
Agroco5
Agro-clustA3
CurtoA1
Frigori2
MicrobacA1
MicrobacB4
NocardioA5
NocardioB2
Propio1
ActiA4
ActiB4
ActiC4
ActiC5
ActiD2
Actiba1
Actiba3
Actino1
Thermobifida1
Nocardio1
Nocardio3
ThermonoA18
ThermonoA8
ThermonoB1
ThermonoB3
Spha5
Denitro6
Collin29
Collin43
Got625
Pet454
AcidUnc
AcidoUnc3
GeoHolo2
RhizoLCSA2
RhizoLCSA3
RhizoLCSA4
RhizoLCSA6
Chlam
OP11-2
OP11-3
OP11-4
OP11-5
GeoVib1
Flex3
Flex5
Flex6
OP2_1
Chloroplast
Muco
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    • Probes used for FISH